Single coordinate model, molecular

Single coordinate model, molecular photochemistry, 493-496 Single-surface nuclear dynamics geometric phase theory, 23-31... 

The RPH concept has been used by Lee and Hynes to develop a model for the description of chemical reactions in polar solvents where the solvent is treated as a polarizable continuum characterized by its dielectric constant. The progress of the reaction from reactants to products is described by a single coordinate Xrc (ignoring any other internal molecular modes), which is chosen on the basis of chemical intuition rather than rigorous definition. For example, in the case of the ionic dissociation AB -> A+ -f B the reaction coordinate Xrc is simply the distance between atoms A and B. 

In homopolymers all tire constituents (monomers) are identical, and hence tire interactions between tire monomers and between tire monomers and tire solvent have the same functional fonn. To describe tire shapes of a homopolymer (in the limit of large molecular weight) it is sufficient to model tire chain as a sequence of connected beads. Such a model can be used to describe tire shapes tliat a chain can adopt in various solvent conditions. A measure of shape is tire dimension of tire chain as a function of the degree of polymerization, N. If N is large tlien tire precise chemical details do not affect tire way tire size scales witli N [10]. In such a description a homopolymer is characterized in tenns of a single parameter tliat essentially characterizes tire effective interaction between tire beads, which is obtained by integrating over tire solvent coordinates. 

Extra radial flexibility has been proved necessary in order to model the valence charge density of metal atoms, in minerals [6,11], and coordination complexes [5], and similar evidence of the inability of single-exponential deformation functions to account for all the information present in the observations have also been found in studies of organic [12, 13] and inorganic [14] molecular crystals. 

Even if we consider a single solvent, e g., water, at a single temperature, say 298K, depends on the solute and in fact on the coordinate of the solute which is under consideration, and we cannot take xF as a constant. Nevertheless, in the absence of a molecular dynamics simulation for the solute motion of interest, XF for polar solvents like water is often approximated by the Debye model. In this model, the dielectric polarization of the solvent relaxes as a single exponential with a relaxation time equal to the rotational (i.e., reorientational) relaxation time of a single molecule, which is called Tp) or the Debye time [32, 347], The Debye time may be associated with the relaxation of the transverse component of the polarization field. However the solvent fluctuations and frictional relaxation occur on a faster scale given by [348,349]... 

The model of a reacting molecular crystal proposed by Luty and Eckhardt [315] is centered on the description of the collective response of the crystal to a local strain expressed by means of an elastic stress tensor. The local strain of mechanical origin is, for our purposes, produced by the pressure or by the chemical transformation of a molecule at site n. The mechanical perturbation field couples to the internal and external (translational and rotational) coordinates Q n) generating a non local response. The dynamical variable Q can include any set of coordinates of interest for the process under consideration. In the model the system Hamiltonian includes a single molecule term, the coupling between the molecular variables at different sites through a force constants matrix W, and a third term that takes into account the coupling to the dynamical variables of the operator of the local stress. In the linear approximation, the response of the system is expressed by a response function X to a local field that can be approximated by a mean field V ... 

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