Self-replicating molecular systems

Competition drives the emergence of natural selection. Such behavior appears to be inevitable in any self-replicating chemical system in which resources are limited and some molecules have the ability to mutate. Over time, more efficient networks of autocatalytic molecules will increase in concentration at the expense of less efficient networks. In such a competitive milieu the emergence of increasing molecular complexity is inevitable new chemical pathways overlay the old. So it is that life has continued to evolve over the past four billion years of Earth history. 

Fig. 10.9 Possible reaction pathway for the formation of a cell. The important precursors are an RNA replicase and a self-replicating vesicle. The combination of these two in a protocell leads to a rapid, evolutionary optimisation of the replicase. The cellular structure is completed if an RNA-coded molecular species, for example, a lipid-synthesised ribozyme, is added to the system (Szostak et al., 2001)... 

Some time after the evolution of this primitive protein-synthesizing system, there was a further development DNA molecules with sequences complementary to the self-replicating RNA molecules took over the function of conserving the genetic information, and RNA molecules evolved to play roles in protein synthesis. (We explain in Chapter 8 why DNA is a more stable molecule than RNA and thus a better repository of inheritable information.) Proteins proved to be versatile catalysts and, over time, took over that function. Lipidlike compounds in the primordial soup formed relatively impermeable layers around self-replicating collections of molecules. The concentration of proteins and nucleic acids within these lipid enclosures favored the molecular interactions required in self-replication. 

Many bacterial cells contain self-replicating, extrachromosomal DNA molecules called plasmids. This form of DNA is closed circular, double-stranded, and much smaller than chromosomal DNA its molecular weight ranges from 2 X 106 to 20 X 106, which corresponds to between 3000 and 30,000 base pairs. Bacterial plasmids normally contain genetic information for the translation of proteins that confer a specialized and sometimes protective characteristic (phenotype) on the organism. Examples of these characteristics are enzyme systems necessary for the production of antibiotics, enzymes that degrade antibiotics, and enzymes for the production of toxins. Plasmids are replicated in the cell by one of two possible modes. Stringent replicated plasmids are present in only a few copies and relaxed replicated plasmids are present in many copies, sometimes up to 200. In addition, some relaxed plasmids continue to be produced even after the antibiotic chloramphenicol is used to inhibit chromosomal DNA synthesis in the host cell. Under these conditions, many copies of the plasmid DNA may be produced (up to 2000 or 3000) and may accumulate to 30 to 40°/o of the total cellular DNA. 

Figure 3.8 Reaction scheme for the formation of an assembled template system for molecular self-replication ...

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