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SCOP database, sequence-structure-function

Protein structure classifications need to be linked with the other genome databases under constructions. Currently, SCOP, CATH, and DDD are valuable resources used mostly for benchmarking of methods and for structural studies. Their impact on biology will be far greater when they are integrated with sequence and function information to present a cohesive picture of the different protein spaces. [Pg.46]

Sequence conservation is, in general, much weaker than structural conservation. There are proteins, which are clearly not related in sequence but are closely related in 3D-stmcture and fold, like heamoglobin and myoglobin, which have similar functions. In many proteins, fold elements like 4-helical bundles are repeated. Classifications of known structural folds of proteins are organized in the SCOP or CATH database see e.g., http //scop.mrc-lmb.cam.ac.uk/scop/. [Pg.778]

See other pages where SCOP database, sequence-structure-function is mentioned: [Pg.245]    [Pg.257]    [Pg.539]    [Pg.210]    [Pg.555]    [Pg.70]    [Pg.161]    [Pg.144]    [Pg.101]    [Pg.43]    [Pg.48]    [Pg.66]    [Pg.144]    [Pg.610]    [Pg.43]    [Pg.367]   


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Database structure

Databases Structural Database

SCOP

SCOP database

Sequence database

Sequence-function

Sequence-structure

Sequencing databases

Sequencing structure

Structural databases

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