Rotational diffusion coefficients

We call the correlation time it is equal to 1/6 Dj, where Dj is the rotational diffusion coefficient. The correlation time increases with increasing molecular size and with increasing solvent viscosity, equation Bl.13.11 and equation B 1.13.12 describe the rotational Brownian motion of a rigid sphere in a continuous and isotropic medium. With the Lorentzian spectral densities of equation B 1.13.12. it is simple to calculate the relevant transition probabilities. In this way, we can use e.g. equation B 1.13.5 to obtain for a carbon-13... 

Three rotational diffusion coefficients, two polar angles 0 and T... 

Rotational diffusion coefficient, Dg, internal motion rate parameter, angle between the internal rotation axis and the internuclear axis... 

Tao T 1969 Time-dependent fluorescence depolarization and Brownian rotational diffusion coefficients of macromolecules Biopolymers 8 609-32... 

Although long-time Debye relaxation proceeds exponentially, short-time deviations are detectable which represent inertial effects (free rotation between collisions) as well as interparticle interaction during collisions. In Debye s limit the spectra have already collapsed and their Lorentzian centre has a width proportional to the rotational diffusion coefficient. In fact this result is model-independent. Only shape analysis of the far wings can discriminate between different models of molecular reorientation and explain the high-frequency pecularities of IR and FIR spectra (like Poley absorption). In the conclusion of Chapter 2 we attract the readers attention to the solution of the inverse problem which is the extraction of the angular momentum correlation function from optical spectra of liquids. 

Rotational correlation time is directly coupled to rotational diffusion coefficient ... 

Small-step rotational diffusion is the model universally used for characterizing the overall molecular reorientation. If the molecule is of spherical symmetry (or approximately this is generally the case for molecules of important size), a single rotational diffusion coefficient is needed and the molecular tumbling is said isotropic. According to this model, correlation functions obey a diffusion type equation and we can write... 

If the considered molecule cannot be assimilated to a sphere, one has to take into account a rotational diffusion tensor, the principal axes of which coincide, to a first approximation, with the principal axes of the molecular inertial tensor. In that case, three different rotational diffusion coefficients are needed.14 They will be denoted as Dx, Dy, Dz and describe the reorientation about the principal axes of the rotational diffusion tensor. They lead to unwieldy expressions even for auto-correlation spectral densities, which can be somewhat simplified if the considered interaction can be approximated by a tensor of axial symmetry, allowing us to define two polar angles 6 and

symmetry axis of the considered interaction) in the (X, Y, Z) molecular frame (see Figure 5). As the tensor associated with dipolar interactions is necessarily of axial symmetry (the relaxation vector being... 

It can be noticed that at least two independent relaxation parameters in the symmetric top case, and three in the case of fully anisotropic diffusion rotation are necessary for deriving the rotation-diffusion coefficients, provided that the relevant structural parameters are known and that the orientation of the rotational diffusion tensor has been deduced from symmetry considerations or from the inertial tensor. 

In most cases, fluorescent molecules undergo anisotropic rotations because of their asymmetry. A totally asymmetric rotor has three different rotational diffusion coefficients, and in cases where the absorption and emission transition moments are not directed along one of the principal diffusion axes, the decay of r(t) is a sum of five exponentials (see Box 5.3). 

In the particular case of prolate and oblate ellipsoids, the number of exponentials is reduced to three because two of the three axes are equivalent. The rotation diffusion coefficients around the axis of symmetry and the equatorial axis are denoted Di and D2, respectively. The emission anisotropy can then be written as... 

For isotropic motions in an isotropic medium, the values of the instantaneous and steady-state emission anisotropies are linked to the rotational diffusion coefficient Dr by the following relations (see Chapter 5) ... 

In fluorescence correlation spectroscopy (FCS), the temporal fluctuations of the fluorescence intensity are recorded and analyzed in order to determine physical or chemical parameters such as translational diffusion coefficients, flow rates, chemical kinetic rate constants, rotational diffusion coefficients, molecular weights and aggregation. The principles of FCS for the determination of translational and rotational diffusion and chemical reactions were first described in the early 1970s. But it is only in the early 1990s that progress in instrumentation (confocal excitation, photon detection and correlation) generated renewed interest in FCS. 

When the excitation light is polarized and/or if the emitted fluorescence is detected through a polarizer, rotational motion of a fluorophore causes fluctuations in fluorescence intensity. We will consider only the case where the fluorescence decay, the rotational motion and the translational diffusion are well separated in time. In other words, the relevant parameters are such that tc rp, where is the lifetime of the singlet excited state, zc is the rotational correlation time (defined as l/6Dr where Dr is the rotational diffusion coefficient see Chapter 5, Section 5.6.1), and td is the diffusion time defined above. Then, the normalized autocorrelation function can be written as (Rigler et al., 1993)... 

The rotational diffusion coefficients used to calculate the variations in T values are discussed in the text... 

There should exist a correlation between the two time-resolved functions the decay of the fluorescence intensity and the decay of the emission anisotropy. If the fluorophore undergoes intramolecular rotation with some potential energy and the quenching of its emission has an angular dependence, then the intensity decay function is predicted to be strongly dependent on the rotational diffusion coefficient of the fluorophore.(112) It is expected to be single-exponential only in the case when the internal rotation is fast as compared with an averaged decay rate. As the internal rotation becomes slower, the intensity decay function should exhibit nonexponential behavior. 

P. B. Garland, Phase and modulation optical spectroscopic methods for determining triplet lifetimes and slow rotational diffusion coefficients, Biochem. Soc. Trans. 15, 838-839 (1986). 

The second piece of evidence in distinguishing rods in a magnetic field to those out of the magnetic field was the rotational diffusion coefficient of the rod. It was the rotational diffusion coefficient that revealed the effect that an applied magnetic field had on a nanorod moving non-Brownian outside a field (2000 ° /s) and in it (70 ° /s). 

H202 (wt.%) Magnetic Field Axial Velocity (/iim/s) Directionality (0.1s) Directionality (2 s) Rotational Diffusion Coefficient C /s)... 

The above experimental results largely relate to spectroscopic techniques, which do not give direct information about the spatial scale of the molecular motions. The size of the spatial heterogeneities is estimated by indirect methods such as sensitivity of the dynamics to the probe size or from the differences between translational and rotational diffusion coefficients (rotation-translation paradox). It might be expected that the additional spatial information provided by neutron scattering could help to discriminate between the two scenarios proposed. 

Here /(S2, t) is an arbitrary function of the two usual polar angles defining the sphere orientation (denoted by S2) and of time t. A is the angular Laplacian while D is the rotational diffusion coefficient ... 

P(Qol, t) is the conditional probability of the orientation being at time t, provided it was Qq a t time zero. The symbol — F is the rotational diffusion operator. In the simplest possible case, F then takes the form of the Laplace operator, acting on the Euler angles ( ml) specifying the orientation of the molecule-fixed frame with respect to the laboratory frame, multiplied with a rotational diffusion coefficient. Dr. Equation (44) then becomes identical to the isotropic rotational diffusion equation. The rotational diffusion coefficient is simply related to the rotational correlation time introduced earlier, by tr = 1I6Dr. 

This article reviews the following solution properties of liquid-crystalline stiff-chain polymers (1) osmotic pressure and osmotic compressibility, (2) phase behavior involving liquid crystal phasefs), (3) orientational order parameter, (4) translational and rotational diffusion coefficients, (5) zero-shear viscosity, and (6) rheological behavior in the liquid crystal state. Among the related theories, the scaled particle theory is chosen to compare with experimental results for properties (1H3), the fuzzy cylinder model theory for properties (4) and (5), and Doi s theory for property (6). In most cases the agreement between experiment and theory is satisfactory, enabling one to predict solution properties from basic molecular parameters. Procedures for data analysis are described in detail. 

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