Retinals excited states

So far we have exclusively discussed time-resolved absorption spectroscopy with visible femtosecond pulses. It has become recently feasible to perfomi time-resolved spectroscopy with femtosecond IR pulses. Flochstrasser and co-workers [M, 150. 151. 152. 153. 154. 155. 156 and 157] have worked out methods to employ IR pulses to monitor chemical reactions following electronic excitation by visible pump pulses these methods were applied in work on the light-initiated charge-transfer reactions that occur in the photosynthetic reaction centre [156. 157] and on the excited-state isomerization of tlie retinal pigment in bacteriorhodopsin [155]. Walker and co-workers [158] have recently used femtosecond IR spectroscopy to study vibrational dynamics associated with intramolecular charge transfer these studies are complementary to those perfomied by Barbara and co-workers [159. 160], in which ground-state RISRS wavepackets were monitored using a dynamic-absorption technique with visible pulses. 

Moreover, carotenoids may quench electronically excited states and scavenge free radicals formed in the retina, and therefore protect biomolecules from oxidative damage. Due to the low energy level of the first excited triplet state ( Car), carotenoids (Car) can act as efficient acceptors of triplet state energy from photosensitizers (S) (Equation 15.1), such as all-tra .s-retinal, the photosensitizers of lipofuscin (Rozanowska et al., 1998), or singlet oxygen C02) (Equation 15.2) (Cantrell et al., 2003) ... 

Pulse radiolysis is used also for preparation of excited states of dienes and polyenes. This is done by irradiation of the diene/polyene in toluene solution. The radiolysis of toluene yield high concentration of molecules in the triplet excited state of the solute. Wilbrandt and coworkers61 pulse-radiolysed 1 mM solution of al I -lrans-1,3,5-heptatriene in toluene solution and observed the absorption spectra of the triplet state of the heptatriene with a maximum at 315 nm. The same group62 produced and measured the absorption spectra of several isomeric retinals in their lowest excited triplet state by pulse irradiation of their dilute solution in Ar-saturated benzene containing 10 2 M naphthalene. Nakabayashi and coworkers63 prepared the lowest triplet states of 1,3-cyclohexadiene,... 

Isomerization of the retinal Schiff s base can occur when the molecule is excited with light, because the C-l 1-C-12 bond loses much of its double-bond character in the excited state. The valence bond diagrams of figure S2.7 illustrate this point. In the ground state of rhodopsin, the potential energy barrier to rotation about the C-l 1-C-l2 bond is on the order of 30 kcal/mol. This barrier essentially vanishes in the excited state. In fact, the energy of the excited molecule probably is minimal when the C-11 -C-l2 bond is twisted by about 90° (fig. S2.8). The excited molecule oscillates briefly about this intermediate conformation, and when it decays back to a ground state it usually settles into the ail-trans isomer, bathorhodopsin. 

The all-tnms-hepta-2,4,6-trieniminium cation (2), a retinal protonated Schiff base model, may undergo trans cis isomerization of the double bond at either position 2 or 4. Thus, the photochemistry is dominated by the structure of the competitive excited state reaction paths leading to distinct conical intersection structures. 

In a model proposed by Lewis [228] the effect of the excited state of retinal on the conformational state of the protein is considered to be the first step of the excitation mechanism. Charge redistribution in the retinal by excitation with light would have the consequence of vibrationally exciting and perturbing the ground state conformation of the protein, i.e., excited retinal would induce transient charge density assisted bond rearrangements (e.g., proton translocation). Subsequently, retinal would assume such an isomeric and conformational state so as to stabilize maximally the new protein structure established. In this model, 11-m to trans isomerization would not be involved in the primary process, but would serve to provide irreversibility for efficient quantum detection. It was also proposed that either the 9-m-retinal (in isorhodopsin) or the 11-m-retinal (in rhodopsin) could yield the same, common... 

Fig. 17. Adiabatic potential of rhodopsin as a function of torsional angle around the 11,12 bond. Curves a and b represent adiabatic potentials of Schiff base in the ground state and in the excited state. Curves c and d represent adiabatic potentials of rhodopsin in the ground and excited states respectively. Rhodopsin (A) by absorption of photon goes to excited state (B), isomerization occurs (C), it then goes nonradiatively to D and to E and finally it dissociates totally into retinal and opsin. Adapted from Kakitani and Kakitani [203],...

Nielsen IB, Lammich L, Andersen LH (2006) SI and S2 excited states of gas-phase schiff-base retinal chromophores. Physical Review Letters 96 018304/1-018304/4. 

RetinalS. The structure and photophysics of rhodopsins are intimately related to the spectroscopic properties of their retiny1-polyene chromophore in its protein-free forms, such as the aldehyde (retinal), the alcohol (retinol or vitamin A), and the corresponding Schiff bases. Since most of the available spectroscopic information refers to retinal isomers (48-55), we shall first center the discussion on the aldehyde derivatives. Three bands, a main one (I) around 380 nm and two weaker transitions at 280 nm and 250 nm (II and III), dominate the spectrum of retinals in the visible and near ultraviolet (Fig. 2). Assignments of these transitions are commonly made in terms of the lowest tt, tt excited states of linear polyenes, the spectroscopic theories of which have been extensively discussed in the past decade (56-60). In terms of the idealized C2h point group of, for example, all-trans butadiene, transitions are expected from the Ta ground state to B , A, and A" excited states... 

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