Receptor-binding site

Desjarlais R L, R P Sheridan, G L Seibel, J S Dixon, ID Kuntz and R Venkataraghavan 1988. Using Shap Complementarity as an Initial Screen in Designing Ligands for a Receptor Binding Site of Know Three-Dimensional Structure. Journal of Medicinal Chemistry 31 722-729. 

Fig. 9. Sweetener receptor binding sites postulated by Tinti and Nofre, where 5 is an anionic group, eg, CO 2y or CN a hydrogen bond donor...

The receptor binding site is formed by the jelly roll domain... 

Figure 5.23 The globular head of the hemagglutinin subunit Is a distorted jelly roll stmcture (a). P strand 1 contains a long Insertion, and P strand 8 contains a bulge in the corresponding position. Each of these two strands is therefore subdivided Into shorter P strands. The loop region between P strands 3 and 4 contains a short a helix, which forms one side of the receptor binding site (yellow circle). A schematic diagram (b) Illustrates the organization of the p strands into a jelly roll motif.

Figure 5.27 Schematic representation of a model for the conformational change of hemagglutinin that at low pH brings the fusion peptide to the same end of the molecule as the receptor binding site. The fusion peptide (purple) is at the end of heUx A about 100 A away from the receptor binding site in the high pH form. In the low pH fragment this region of helix A has moved about 100 A towards the area where the receptor binding sites are expected to be in the intact hemagglutinin molecule. (Adapted from D. Stuart, Nature 371 19-20, 1994.)...

From these preliminary results, we can assume that such enantiophore queries could be used to search in a database of compounds with unknown enantioselectiv-ities. With respect to the percentage of resolved samples that are retrieved in CHIRBASE, the resulting list should contain a similar yield of compounds providing favorable specific interactions with the CSP receptor binding sites. 

Association constant, the ratio of the rate of onset of a molecule to a receptor binding site and the rate of... 

The ability of PO to interact with the acetyl residues of chitin allows us to compare them with monovalent lectins (i.e. extensins) which when binding with hemicellulose are only affected in a medium with a high ionic strength (Brownleader et al., 2006). As a rule, POs are bound with the plant cell wall and act as its modifiers. Some POs can form complexes with an extensin of cell walls (Brownleader et al., 2006). Consequently, chitin-specific sites that are capable of interacting with polysaccharides exist in the molecules of PO, and these sites can resemble the membrane receptor binding sites or else be similar to the domains of heparinbinding proteins (Kim et al., 2001). 

Zaczek, R. Arlis, S. Markl, A. Murphy, T. Drucker, H. and Coyle, J.T. Characteristics of chloride dependent incorporation of glutamate into brain membranes argue against a receptor binding site. Neuropharmacology 26 281-287, 1987. 

Characterization of Phencyclidine and Sigma Receptor-Binding Sites in Brain... 

---