Radiolabeling/radiolabeled analysis

Green NA, AA Meharg, C Till, J Troke, JK Nicholson (1999) Degradation of 4-fluorobiphenyl by mycorrizal fungi as determined by F nuclear magnetic resonance spectroscopy and " C radiolabelling analysis. Appl Environ Microbiol 65 4021-4027. 

Berger and Mcycrhoff150 also reported that termination involves substantial disproportionation. They determined the initiator fragments per molecule in PS prepared with radiolabeled AIBN and conducted a detailed kinetic analysis of the system. They also found a marked temperature dependence for k k. Values of kt fkK ranged from 0.168 at 30 °C to 0.663 at 80 °C. 

This validation typically requires samples with radiolabeled analytes. However, alternative approaches are proposed which involve (i) comparison with extraction of samples using a procedure which has been previously validated rigorously, (ii) comparison with extraction of samples by a very different technique or (iii) analysis of a certified reference material. Generally, this validation should be performed with samples containing analyte incurred by the route by which residues would normally be expected to arise. The simplest option (i) requires fully validated and documented enforcement methods provided by the manufacturer of a pesticide. 

One of the first decisions to be made when designing an experiment is the method of detection to be used with a particular solute. If radiolabeled material is available, a simple method of analysis is to count the radiolabel appearing in the receiver compartment as a function of time. While convenient, this can be a dangerous practice. Depending upon the type of radioisotope, its position in the molecule, and its specific activity, radiolabeled compounds can be subject to a variety of chemical and solution-catalyzed degradation pathways. If the stock solution contains a significant amount of radioactive impurities or generates them as a result of solution instability, then the possibility for preferential transport of... 

The suppression and recovery of protein synthesis from DTT treatment (without cycloheximide treatment) can be monitored via metabolic pulse radiolabeling of cell cultures using [35S]-methionine and subsequent determination of radiolabeled protein content either by SDS-PAGE/ phosphor-imager analysis or liquid scintillation of tricholoroacetic acid insoluble material (Stephens et al., 2005). 

Figure 11.4 Analysis of in vitro synthesized RNAs. 32P-Radiolabeled RNAs (48 nucleotides) capped with m7Gp3G (A and C) or m27,3 °Gp3G (B and D) were digested with either RNase T2 (A and C) or RNase T2 plus tobacco acid pyrophosphatase (TAP) (B and D) followed by anion-exchange HPLC on a Partisil 10SAX/25 column as described in the text. Fractions of 1 ml were collected, and the Cerenkov radiation was determined. The elution times of the following standard compounds, detected by ultraviolet (UV) absorption, are indicated with arrows 3,-CMP (Cp), S UMP (Up), 37-AMP (Ap), 3 -GMP (Gp), 3, 5 -m7GDP (pm7Gp), 3, 5 -GDP (pGp), 5 -GDP (p2G), 5 -GTP (p3G), and guanosine-SCtetraphosphate (P4G).

In order to facilitate analysis of FeBABE produced fragments, the prey protein or biomolecule is labeled at one end with a tag that can be detected after electrophoresis, usually in a transfer blot. The tag can be a fusion tag, such as 6X His, or any other group that can be targeted with an antibody and detected. Alternatively, radiolabels and fluorescent labels have been used with prey molecules, including the use of end-labeled DNA to study where DNA binding proteins dock onto the oligonucleotide sequence. 

Genetic analysis indicates that two of the 10 sad mutants of A. strigosa that we isolated represent different mutant alleles at the Sadi locus.6 These mutants accumulate radiolabelled 2,3-oxidosqualene but not p-amyrin when the roots are fed with 14C-labelled precursor mevalonic acid, suggesting that the triterpenoid pathway is blocked between 2,3-oxidosqualene and P-amyrin.34 The roots of these mutants also lack detectable P-amyrin synthase activity, but, like the wild type and the other mutants, are unimpaired in cycloartenol synthase (CS) activity and sterol biosynthesis.34 The transcript levels for AsbASl are substantially reduced in roots of sadl mutants, while AsCSl transcript levels are unaffected,35 suggesting that the sadl mutants are either mutated in the AsbASl gene itself or in a gene involved in its regulation. 

Figure 12.8 A. 2-PS reaction. B. Surface representations of the CHS (left) and 2-PS (right) active site cavities are shown. The catalytic cysteines (red), the three positions that convert CHS into 2-PS (green), and the substitution that does not affect product formation (blue) are highlighted. C. TLC analysis of CHS, 2-PS, and CHS mutant enzymes. The radiogram shows the radiolabeled products produced by incubation of each protein with [14C]malonyl-CoA and either p-coumaroyl-CoA (C) or acetyl-CoA (A). Numbering of mutants corresponds to CHS with 2-PS numbering in parenthesis. Positions of reaction products and their identities are indicated.

In the early years of analysis data on the bioconcentration of LAS in biota were obtained using radiolabeled compounds and LSC, not distinguishing between parent compounds and metabolites [1,27,30]. These methods were non-specific and the data produced were unreliable due to overestimation. Therefore, it was important to develop accurate and specific analytical techniques in order to isolate and quantify these separately. 

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