Quantum energy functional

Solution of the Schrodinger equation can be viewed similarly. The quantum energy functional (analog of the Poisson action functional above) is... 

Both the BO dynamics and Gaussian wavepacket methods described above in Section n separate the nuclear and electronic motion at the outset, and use the concept of potential energy surfaces. In what is generally known as the Ehrenfest dynamics method, the picture is still of semiclassical nuclei and quantum mechanical electrons, but in a fundamentally different approach the electronic wave function is propagated at the same time as the pseudoparticles. These are driven by standard classical equations of motion, with the force provided by an instantaneous potential energy function... 

Inadequate availability of experimental data can considerably inhibit the development of improved energy functions for more accurate simulations of energetic, structural, and spectroscopic properties. This has led to the development of class II force fields such as CFF and the Merck Molecular Force Field (MMFF), which are both based primarily on quantum mechanical calculations of the energy surface. The purpose of MMFF, which has been developed by Thomas Halgren at Merck and Co., is to be able to handle all functional groups of interest in pharmaceutical design. 

A Fortran90 library for the simulation of molecular systems using molecular mechanics (MM) and hybrid quantum mechanics/molecular mechanics (QM)/ MM) potential energy functions. http //www.ibs.fr/ext/labos/LDM/projet6/... 

Empirical energy functions can fulfill the demands required by computational studies of biochemical and biophysical systems. The mathematical equations in empirical energy functions include relatively simple terms to describe the physical interactions that dictate the structure and dynamic properties of biological molecules. In addition, empirical force fields use atomistic models, in which atoms are the smallest particles in the system rather than the electrons and nuclei used in quantum mechanics. These two simplifications allow for the computational speed required to perform the required number of energy calculations on biomolecules in their environments to be attained, and, more important, via the use of properly optimized parameters in the mathematical models the required chemical accuracy can be achieved. The use of empirical energy functions was initially applied to small organic molecules, where it was referred to as molecular mechanics [4], and more recently to biological systems [2,3]. 

The dispersion (London) force is a quantum mechanieal phenomenon. At any instant the electronic distribution in molecule 1 may result in an instantaneous dipole moment, even if 1 is a spherieal nonpolar moleeule. This instantaneous dipole induces a moment in 2, which interacts with the moment in 1. For nonpolar spheres the induced dipole-induced dipole dispersion energy function is... 

The key feature in statistical mechanics is the partition function Just as the wave function is the corner-stone of quantum mechanics (from that everything else can be calculated by applying proper operators), the partition function allows calculation of alt macroscopic functions in statistical mechanics. The partition function for a single molecule is usually denoted q and defined as a sum of exponential terms involving all possible quantum energy states Q is the partition function for N molecules. 

Electron work functions of metals in solution can be determined by measurements of the current of electron photoemission into the solution. In an electrochemical system involving a given electrode, the photoemission current ( depends not only on the light s frequency v (or quantum energy hv) but also on the potential E. According to the quantum-mechanical theory of photoemission, this dependence is given by... 

The calculation of the potential of mean force, AF(z), along the reaction coordinate z, requires statistical sampling by Monte Carlo or molecular dynamics simulations that incorporate nuclear quantum effects employing an adequate potential energy function. In our approach, we use combined QM/MM methods to describe the potential energy function and Feynman path integral approaches to model nuclear quantum effects. 

The ratio of the quantum partition functions (Eq. (4-29)) for two different isotopes can be obtained directly through free energy perturbation (FEP) theory by perturbing the mass from the light isotope to the heavy isotope. Consequently, only one simulation of a given isotopic reaction is performed, while the ratio of the partition function, i.e., the KIE, to a different isotopic reaction, is obtained by FEP. This is conceptually and practically an entirely different approach than that used previously [23]. 

Wong K-Y, Gao J (2008) Systematic approach for computing zero-point energy, quantum partition function, and tunneling effect based on Kleinert s variational perturbation theory. J Chem Theory Comput 4(9) 1409-1422... 

Figure 3.3 (a) The potential energy function assumed in the particle-in-a-one-dimensional-box model, (b) A wave function satisfying the boundary conditions, (c) An unacceptable wave function. (Reproduced with permission from P. A. Cox, Introduction to Quantum Theory and Atomic Structure, 1996, Oxford University Press, Oxford, Figure 2.6.)... 

The analytic potential energy surfaces, used for the Cl + CH3Clb and Cl + CHjBr trajectory studies described here, should be viewed as initial models. Future classical and quantum dynamical calculations of SN2 nucleophilic substitution should be performed on quantitative potential energy functions, derived from high-level ab initio calculations. By necessity, the quantum dynamical calculations will require reduced dimensionality models. However, by comparing the results of these reduced dimensionality classical and quantum dynamical calculations, the accuracy of the classical dynamics can be appraised. It will also be important to compare the classical and quantum reduced dimensionality and classical complete dimensionality dynamical calculations with experiment. 

By making the assumption that the quantum numbers are continuous, the number of allowed energy states per unit volume that have an energy between E and E + dE, it can be shown that the energy function is... 

---