Protonation side chains

AX-RA 513 (24) is another analog of piren-zepine and exhibits selectivity toward M2 receptors (104). The spatial orientation of the protonated side-chain nitrogen atom in relation to the tricycle seems to be of major importance for M1/M2 selectivity. 

In pyrimidines, a 4-alkyl- is deprotonated more readily than a 2-aUcyl-gronp here again one sees the greater stability associated with a y-qninonoid resonating anion. Side-chain radical halogenation selects a pyrimidine-5-methyl over a pyrimidine-4-methyl the reverse selectivity can be achieved by halogenation in acid solntion - presnmably an iV-protonated, side-chain-deprotonated species, i.e. the enamine tantomer, is involved. ... 

The protonated side chain of arginine is stabilized by resonance, so it is a weak acid. This is a case where resonance stabilizes the conjugate acid. 

Proton-catalyzed olefin cyclizations of open-chain educts may give tri- or tetracyclic products but low yields are typical (E.E. van Tamelen, 1968, 1977 see p. 91). More useful are cyclizations of monocyclic educts with appropriate side-chains. The chiral centre to which the chain is attached may direct the steric course of the cyclization, and several asymmetric centres may be formed stereoselectively since the cyclizations usually lead to traas-fused rings. 

Individual ammo acids differ m their acid-base properties This is important m peptides and proteins where the properties of the substance depend on its ammo acid constituents especially on the nature of the side chains It is also important m analyses m which a complex mixture of ammo acids is separated into its components by taking advantage of the differences m their proton donating and accepting power... 

The imidazole nng of the histidine side chain acts as a proton acceptor in certain enzyme catalyzed reactions Which is the more stable protonated form of the histidine residue A or Why" ... 

Proton chemical shift data from nuclear magnetic resonance has historically not been very informative because the methylene groups in the hydrocarbon chain are not easily differentiated. However, this can be turned to advantage if a polar group is present on the side chain causing the shift of adjacent hydrogens downfteld. High resolution C-nmr has been able to determine position and stereochemistry of double bonds in the fatty acid chain (62). Broad band nmr has also been shown useful for determination of soHd fat content. 

Wool has a complex chemical stmcture, composed mainly of a large number of different proteins (87). It is amphoteric in character because of the presence of basic amino and acidic carboxyl groups in the side chains of some of the component amino acids. In an aqueous acidic dyebath, protonation of the amino and carboxyl groups results in a net positive charge on the fiber. 

The side-chain chlorine contents of benzyl chloride, benzal chloride, and benzotrichlorides are determined by hydrolysis with methanolic sodium hydroxide followed by titration with silver nitrate. Total chlorine determination, including ring chlorine, is made by standard combustion methods (55). Several procedures for the gas chromatographic analysis of chlorotoluene mixtures have been described (56,57). Proton and nuclear magnetic resonance shifts, characteristic iafrared absorption bands, and principal mass spectral peaks have been summarized including sources of reference spectra (58). Procedures for measuring trace benzyl chloride ia air (59) and ia water (60) have been described. 

H- H coupling constants, 4, 558 ring proton coupling to side chain atoms, 4, 559 C NMR, 4, 564-569, 940... 

In addition to binding to sialic acid residues of the carbohydrate side chains of cellular proteins that the virus exploits as receptors, hemagglutinin has a second function in the infection of host cells. Viruses, bound to the plasma membrane via their membrane receptors, are taken into the cells by endocytosis. Proton pumps in the membrane of endocytic vesicles that now contain the bound viruses cause an accumulation of protons and a consequent lowering of the pH inside the vesicles. The acidic pH (below pH 6) allows hemagglutinin to fulfill its second role, namely, to act as a membrane fusogen by inducing the fusion of the viral envelope membrane with the membrane of the endosome. This expels the viral RNA into the cytoplasm, where it can begin to replicate. 

---