Polypeptide prosthetic groups

Biosynthesis of the polypeptide chain is realised by a complicated process called translation. The basic polypeptide chain is subsequently chemically modified by the so-called posttranslational modifications. During this sequence of events the peptide chain can be cleaved by directed proteolysis, some of the amino acids can be covalently modified (hydroxylated, dehydrogenated, amidated, etc.) or different so-called prosthetic groups such as haem (haemoproteins), phosphate residues (phosphoproteins), metal ions (metal-loproteins) or (oligo)saccharide chains (glycoproteins) can be attached to the molecule by covalent bonds. Naturally, one protein molecule can be modified by more means. 

Frequently, metal ions are associated with the prosthetic group or cofactor. Heme rings usually contain a chelated iron atom. Occasionally, however, these metals are merely bound within folded polypeptide regions with no additional organic constituents required. Many metal ions are known to participate in enzymatic activity. One or more of the ions of Na, K, Ca, Zn, Cu, Mg, Mn, as well as Co and Mo are often required by enzymes to maintain activity. 

Schematic representation of the polypeptides and the prosthetic groups in the minimal functional modules of hydrogenases... 

FIGURE 19-33 Bacterial respiratory chain, (a) Shown here are the respiratory carriers of the inner membrane of E. coli. Eubacteria contain a minimal form of Complex I, containing all the prosthetic groups normally associated with the mitochondrial complex but only 14 polypeptides. This plasma membrane complex transfers electrons from NADH to ubiquinone or to (b) menaquinone, the bacterial equivalent of ubiquinone, while pumping protons outward and creating an electrochemical potential that drives ATP synthesis. 

Cytochrome c consists of a polypeptide chain, from 104 to 108 amino acid residues in length. A single heme prosthetic group is attached by thioelher bonds formed between the sulfhydryl side chains of two cysteine... 

A number of proteins, including myoglobin, possess one or more nonpeptide components associated with specific sites on the polypeptide chain. These components are called prosthetic groups and are essentia to the biological activity. When the prosthetic group is removed, the residual protein is referred to as an apoprotein. 

Myoglobin was the first protein to have its three-dimensional structure solved by X-ray crystallography. It is a globular protein made up of a single polypeptide chain of 153 amino acid residues that is folded into eight a-helices. The heme prosthetic group is located within a hydrophobic cleft of the folded polypeptide chain. 

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