Principal component analysis chemometric applications

Malinowski ER, Theory of the distribution of error eigenvalues resulting from principal component analysis with applications to spectroscopic data, Journal of Chemometrics, 1987, 1, 33-40. 

One of the emerging biological and biomedical application areas for vibrational spectroscopy and chemometrics is the characterization and discrimination of different types of microorganisms [74]. A recent review of various FTIR (Fourier transform infrared spectrometry) techniques describes such chemometrics methods as hierarchical cluster analysis (HCA), principal component analysis (PCA), and artificial neural networks (ANN) for use in taxonomical classification, discrimination according to susceptibility to antibiotic agents, etc. [74],... 

There are several chemometric methods applicable which provide numerical analytical data and their implementation remains a specialist affair. They vary from simple statistical tools such as principal component analysis (PCA) to highly complex methods such as neural networks. 

To establish a correlation between the concentrations of different kinds of nucleosides in a complex metabolic system and normal or abnormal states of human bodies, computer-aided pattern recognition methods are required (15, 16). Different kinds of pattern recognition methods based on multivariate data analysis such as principal component analysis (PCA) (8), partial least squares (16), stepwise discriminant analysis, and canonical discriminant analysis (10, 11) have been reported. Linear discriminant analysis (17, 18) and cluster analysis were also investigated (19,20). Artificial neural network (ANN) is a branch of chemometrics that resolves regression or classification problems. The applications of ANN in separation science and chemistry have been reported widely (21-23). For pattern recognition analysis in clinical study, ANN was also proven to be a promising method (8). 

The ultimate development in the field of sample preparation is to eliminate it completely, that is, to make a chemical measurement directly without any sample pretreatment. This has been achieved with the application of chemometric near-infrared methods to direct analysis of pharmaceutical tablets and other pharmaceutical solids (74-77). Chemometrics is the use of mathematical and statistical correlation techniques to process instrumental data. Using these techniques, relatively raw analytical data can be converted to specific quantitative information. These methods have been most often used to treat near-infrared (NIR) data, but they can be applied to any instrumental measurement. Multiple linear regression or principal-component analysis is applied to direct absorbance spectra or to the mathematical derivatives of the spectra to define a calibration curve. These methods are considered secondary methods and must be calibrated using data from a primary method such as HPLC, and the calibration material must be manufactured using an equivalent process to the subject test material. However, once the calibration is done, it does not need to be repeated before each analysis. 

With a large data set of structures and properties, it is possible to use multivariate statistical methods such as principal components analysis to try to identify patterns. The applications of statistics to chemistry is known as chemometrics and an internet search for this keyword will lead to a variety of useful sources of information on the field. Some QSAR methods are based on the molecular orbitals of the compounds in the... 

Among the different chemometric methods, exploratory data analysis and pattern recognition are frequently used in the area of food analysis. Exploratory data analysis is focused on the possible relationships between samples and variables, while pattern recognition studies the behavior between samples and variables [95]. Principal component analysis (PCA) and partial least-squares discriminant analysis (PLS-DA) are the methods most commonly used for exploratory analysis and pattern recognition, respectively. The importance of these statistical tools has been demonstrated by the wide number of works in the field of food science where they have been applied. The majority of the applications are related to the characterization and authentication of olive oil, animal fats, marine and vegetable oils [95], wine [97], fruit juice [98], honey [99], cheese [100,101], and so on, although other important use of statistical tools is the detection of adulterants or frauds [96,102]. 

Otto, M., Chemometrics Statistics and Computer Application in Analytical Chemistry. Wiley-VCH, Weinheim, Germany, 1999. Chapter 5.2. Principal component analysis, pp. 125—132. Heberger, K., Evaluation of polarity indicators and stationary phases hy principal component analysis in gas-liquid chromatography. Chemom. Intell. Lab. Syst., 47, 41-49 (1999). 

Because of peak overlappings in the first- and second-derivative spectra, conventional spectrophotometry cannot be applied satisfactorily for quantitative analysis, and the interpretation cannot be resolved by the zero-crossing technique. A chemometric approach improves precision and predictability, e.g., by the application of classical least sqnares (CLS), principal component regression (PCR), partial least squares (PLS), and iterative target transformation factor analysis (ITTFA), appropriate interpretations were found from the direct and first- and second-derivative absorption spectra. When five colorant combinations of sixteen mixtures of colorants from commercial food products were evaluated, the results were compared by the application of different chemometric approaches. The ITTFA analysis offered better precision than CLS, PCR, and PLS, and calibrations based on first-derivative data provided some advantages for all four methods. ... 

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