Polyprenyl chain

Long-chain polyisoprenoid. molecules with a terminal alcohol moiety are called, polyprenols. The dolichols, one class of polyprenols (Figure 8.18), consist of 16 to 22 isoprene units and, in the form of dolichyl phosphates, function to carry carbohydrate units in the biosynthesis of glycoproteins in animals. Polyprenyl groups serve to anchor certain proteins to biological membranes (discussed in Chapter 9). 

FIGURE 8.18 Dolichol phosphate is an initiation point for the synthesis of carbohydrate polymers in animals. The analogous alcohol in bacterial systems, undecaprenol, also known as bactoprenol, consists of 11 isoprene units. Undecaprenyl phosphate delivers sugars from the cytoplasm for the synthesis of cell wall components such as peptidoglycans, lipopolysaccharides, and glycoproteins. Polyprenyl compounds also serve as the side chains of vitamin K, the ubiquinones, plastoquinones, and tocopherols (such as vitamin E). 

The third pathway involved in the quinones biosynthesis is the isoprenoid route. This pathway is primarily important for the formation of prenyl side chains of prenylquinones (ubiquinone, menaquinone, plastoquinones, etc.). The side chains of ubiquinones and prenylated naphthoquinones derive from polyprenyl diphosphates. 

The isoprenoid side chains of quinones are biosynthesized mainly by the mevalonic acid pathway from acetyl-CoA. Another pathway to biosynthesizing isoprenoids is the so-called non-mevalonate ronte by which isopentenyldiphosphate (IPP) is formed from glyceraldehyde 3-phosphate and pyrnvate. The key molecule is the famesyl-diphosphate (FPP) that accepts other IPP molecules to form polyprenyl diphosphates. 

The advantages of supercritical fluid chromatography for polymer separations have been illustrated in the literature for many years. A recent example is the separation of long-chain polyprenols using SFC with matrix-assisted laser-desorption ionization TOF mass spectrometry [10]. The generic name for 1,4-polyprenyl alcohols is polyprenol these compounds generally have smaller polymerization chains of less... 

Menaquinone. The incorporation of [2- C]mevalonate and [2- C]-2-methyl-l,4-naphthoquinone into MK-4, normally considered a bacterial quinone, has been demonstrated in marine invertebrates such as crabs and starfish." Incorporation into 2,3-epoxy-MK-4 (163) was also observed. Cell-free extracts have been prepared from Escherichia coli which catalyse the conversion of o-succinylbenzoic acid (164) into l,4-dihydroxy-2-naphthoic acid (165) and menaquinones. In the presence of farnesyl pyrophosphate the major menaquinone produced was MK-3. Genetic studies with mutants of E. coli K12 that require (164) offer support for the generally accepted pathway for MK biosynthesis via (164) and (165)." The enzyme system that catalyses the attachment of the polyprenyl side-chain to 1,4-dihydroxy-2-naphthoic acid to form demethylmenaquinone-9 (166) has been isolated from E. colU ... 

Pozzi, G., Birault, V., Werner, B. (1996). Single-chain polyprenyl phosphates form primitive membranes. Angew. Chem. Int. Ed. Engl, 35, 177-9. 

The finding that dolichols differ in chain length has, of course, raised the question of the polyprenyl specificity of the various glyco-syltransferases. The idea that different (that is, not miscible) pools of dolichol phosphate exist for different glycosyltransferases has also emerged, and was discussed in a review by Elbein.35 Conflicting evidence has been obtained,36-38 and this point needs further investigation. 

Inhibitors of HMG-CoA reductase activity (for example compac-tin240), or compounds that lower the levels of the enzyme (including a number of oxygenated cholesterol derivatives,241- 24 la such as 25-liy-droxycholesterol), not only decrease the formation of polyprenyl diphosphate, but also affect the formation of cholesterol and the polyprenyl side-chains of coenzyme Q. Consequently, prolonged treatment with such compounds may cause side effects, for example, changes in membrane fluidity (see also, Section III,5), decreased activity of membrane enzymes,1214,2,3 and inactivation of membrane transport systems,246 and, therefore, indirectly prevent glvcosvlation of proteins. 

In 1955, R. A. Morton and associates in Liverpool announced the isolation of a quinone which they named ubiquinone for its ubiquitous occurrence.484 485 It was characterized as a derivative of benzoquinone attached to an unsaturated polyprenyl (isoprenoid) side chain (Fig. 15-24). In fact, there is a family of ubiquinones that from bacteria typically contains six prenyl units in its side chain, while most ubiquinones from mammalian mitochondria contain ten. Ubiquinone was also isolated by F. L. Crane and associates using isooctane extraction of mitochondria. These workers proposed that the new quinone, which they called coenzyme Q, might participate in electron transport. As is described in Chapter 18, this function has been fully established. Both the name ubiquinone and the abbreviation Q are in general use. A subscript indicates the number of prenyl units, e.g., Q10. Ubiquinones can be reversibly reduced to the hydro-quinone forms (Fig. 15-24), providing a basis for their function in electron transport within mitochondria and chloroplasts.486 490... 

Another important family of quinones, related in structure to those already discussed, are the vitamins K (Fig. 15-24, Box 15-F). These occur naturally as two families. The vitamins K, (phylloquinones) have only one double bond in the side chain and that is in the prenyl unit closest to the ring. This suggests again the possibility of chromanol formation. In the vitamin K2 (menaquinone) series, a double bond is present in each of the prenyl units. A synthetic compound menadione completely lacks the polyprenyl side chain and bears a hydrogen in the corresponding position on the ring. Nevertheless, menadione serves as a synthetic vitamin K, apparently because it can be converted in the body to forms containing polyprenyl side chains. 

Why does this entire family of compounds have the long polyprenyl side chains A simple answer is that they serve to anchor the compounds in the lipid portion of the cell membranes where they function. 

The second five-carbon branched unit, in which the branch is one carbon further down the chain, is an intermediate in the biosynthesis of polyprenyl (isoprenoid) compounds and steroids. Three two-carbon units are used as the starting material with decarboxylation of one unit. Two acetyl units are first condensed to form acetoacetyl-CoA. Then a third acetyl unit, which has been transferred from acetyl-CoA onto an SH group of the enzyme, is combined with the acetoacetyl-CoA through an ester condensation. The thioester linkage to the enzyme is hydrolyzed to free the product 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA). This sequence is illustrated in Eq. 17-5. The thioester group of HMG-CoA is reduced to the... 

An insertion mechanism for synthesis of cellulose. Using 14C "pulse and chase" labeling Han and Robyt found that new glucosyl units are added at the reducing ends of cellulose chains formed by cell membrane preparations from A. xylinum.135 This conclusion is in accord with the generalization that extracellular polysaccharides made by bacteria usually grow from the reducing end by an insertion mechanism that depends upon a polyprenyl alcohol present in the cell membrane.136 This lipid alcohol, often the C55... 

Insertion of monomer units at the base of a chain is a major mechanism of polymerization that is utilized for synthesis not only of polysaccharides but also of proteins (Chapter 29). For most carbohydrates the synthesis is dependent upon a polyprenyl lipid alcohol, hi bacteria this is often the 55-carbon undecaprenol or bactoprenol,136 which functions as a phosphate ester ... 

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