Polyacrylamide fractionation

Polymers in Solution. Polyacrylamide is soluble in water at all concentrations, temperatures, and pH values. An extrapolated theta temperature in water is approximately —40° C (17). Insoluble gel fractions are sometimes obtained owing to cross-link formation between chains or to the formation of imide groups along the polymer chains (18). In very dilute solution, polyacrylamide exists as unassociated coils which can have an eUipsoidal or beanlike stmcture (19). Large aggregates of polymer chains have been observed in hydrolyzed polyacrylamides (20) and in copolymers containing a small amount of hydrophobic groups (21). 

TABLE 16.8 Producers (Bio-Rad) Specification of Fractionation Ranges of Polyacrylamide-Based Bio-Gel P Gels... 

The type of CSPs used have to fulfil the same requirements (resistance, loadabil-ity) as do classical chiral HPLC separations at preparative level [99], although different particle size silica supports are sometimes needed [10]. Again, to date the polysaccharide-derived CSPs have been the most studied in SMB systems, and a large number of racemic compounds have been successfully resolved in this way [95-98, 100-108]. Nevertheless, some applications can also be found with CSPs derived from polyacrylamides [11], Pirkle-type chiral selectors [10] and cyclodextrin derivatives [109]. A system to evaporate the collected fractions and to recover and recycle solvent is sometimes coupled to the SMB. In this context the application of the technique to gas can be advantageous in some cases because this part of the process can be omitted [109]. 

Figure 5. Analytical isoelectric focusing. Ultrathin layers (0.4 nun) of polyacrylamide with ampholytes pH 2-11 were used. Samples of 10 pg of protein in 10 pi of 1 % glycine were applied. A.- Silver staining. B.- Stain for activity on overlays containing pectin in tris/HCl buffer at pH 8.0 with CaClj M.- Broad pi Calibration Kit protein (Pharmacia), samples of 5 pg of protein were applied. 1.-Ammonium sulphate precipitated proteins from cultures on pectin. 2.- Fractions with PNL activity eluted from the Superdex 75HR1030 column. 3.- Purified PNL.

Fig. 5. Isoelectric focusing (pH gradient 3-10) of Fraction A and Fraction B in ultrathin polyacrylamide layers. 5 pg of fractions were applied. Activity detection with ruthenium red (left) and with Ostazin Brilliant Red/D-galacturonan DP 10 agar print (right).

Many synthetic water-soluble polymers are easily analyzed by GPC. These include polyacrylamide,130 sodium poly(styrenesulfonate),131 and poly (2-vinyl pyridine).132 An important issue in aqueous GPC of synthetic polymers is the effect of solvent conditions on hydrodynamic volume and therefore retention. Ion inclusion and ion exclusion effects may also be important. In one interesting case, samples of polyacrylamide in which the amide side chain was partially hydrolyzed to generate a random copolymer of acrylic acid and acrylamide exhibited pH-dependent GPC fractionation.130 At a pH so low that the side chain would be expected to be protonated, hydrolyzed samples eluted later than untreated samples, perhaps suggesting intramolecular hydrogen bonding. At neutral pH, the hydrolyzed samples eluted earlier than untreated samples, an effect that was ascribed to enlargement... 

Prokaryotic cells express hundreds to thousands of proteins while higher eukaryotes express thousands to tens of thousands of proteins at any given time. If these proteins are to be individually identified and characterized, they must be efficiently fractionated. One-dimensional sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) has typically been use to study protein mixtures of <100 proteins. Onedimensional electrophoresis is useful because nearly all proteins are soluble in SDS, molecules ranging from approximately 10,000 to 300,000 molecular weight can be resolved, and extremely basic or acidic proteins can be visualized. The major disadvantage to one-dimensional gels is that they are not suitable for complex mixtures such as proteins from whole cell lysates. 

O Farrell PH et al. Two-dimensional polyacrylamide gel electrophoretic fractionation. Methods Cell Biol 1977 16 407-420. 

Figure 15.5 IEF gel electrophoresis of formalin-treated RNase A (a) and its fractions (b) separated by gel filtration, (a) M, IEF markers (pi) lane 1, unfractionated formalin-treated RNase A. (b) lane 1, monomer lane 2, dimer lane 3, trimer lane 4, tetramer lane 5, pentamer. IEF gel electrophoresis was performed using precast 5% polyacrylamide gels with a pi range of 3-10. The pi range for the individual oligomers in 15.5b appears greater than that for the unfractionated sample because a higher concentration of protein was used for the lanes in 15.5b. This results in an increased staining intensity for the oligomers at the pi extremes, which are minor components of the unfractionated sample in 15.5a. See Rait et al.10 for details.

Mullen et al. (1989) reported that Bacillus cereus, B. subtilis, E. coli and P. aeruginosa were able to sorb an average of 89% of the total Ag+ and 12-27% of the total Cd2+, Cu2+ and La3+ from a ImM solution. Using polyacrylamide-entrapped cells of Brevibacterium sp strain PBZ, Simine et al. (1998) measured a sorption capacity of 40 mg g-1 and 13 mg g-1 dry biomass for Pb and Cd, respectively. Hall et al. (2001) isolated two bacterial strains of P. syringae that were tolerant to 1000 mg L-1 Cu. Similarly, Amoroso et al. (2001) were able to obtain Streptomyces spp. strains R22 and R25 with a high tolerance to Cr from sediments of the Sail River, Argentina. The cells of R22 and R25 could accumulate 10.0 and 5.6 mg Cr g-1 dry weight, respectively, from a concentration of 50 mg Cr mL 1. Cell fractionation studies with strain R22 showed that most of the chromium... 

The chromatographic procedure may be performed using (a) a column (about 85 cm x 10 mm) packed with polyacrylamide or cross-linked dextran for chromatography having a fractionation range for peptides with... 

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