Tryptic peptide

Segment in model Hydro- Negatively charged residues Hydrophobic labelling of peptide Tryptic limit peptide... 

Matsxtbara, H., and E. L. Smith Human heart cytochrome c. Chymo-tryptic peptides, tryptic peptides and the complete amino acid sequence. Journ. Biol. Chem. 238, 2732—2753 (1963). 

Despite the high lysine and arginine content of most antimicrobial peptides, tryptic digests typically yield medium-sized peptides, as often a proline residue follows these basic residues eliminating the cleavage site. 

Simple peptides, tryptic digest of calcitonin, glucagons, and cytochrome c Casein tryptic and ACTH-endoproteinase Arg C digests... 

Microheterogeneous proteins Transferrin Mixtures of drugs, peptides, tryptic digests of proteins, biological fluids Urinary CPlll and CPI... 

Fig. 12. Tryptic map of it-PA (mol wt = 66,000) showing peptides formed from hydrolysis of reduced, alkylated rt-PA. Separation by reversed-phase octadecyl (C g) column using aqueous acetonitrile with an added acidic agent to the mobile phase. Arrows show the difference between A, normal, and B, mutant rt-PA where the glutamic acid residue, D, has replaced the normal arginine residue, C, at position 275.

CGRP has a wide distribution in the nervous system (19) and was the first peptide to be localized to motoneurons (124). It is also found in primary sensory neurons where it is colocalized with substance P (125). CGRP is derived from a precursor stmcturaHy related to the calcitonin precursor. The latter precursor produces two products, calcitonin itself and katacalcin, while the CGRP precursor produces one copy of CGRP (123). Like other peptides, CGRP is cleaved from its precursor by tryptic breakdown between double basic amino acid residues. 

FIGURE 8.13 SEC of casein hydrolyzates. Numbers above the peaks refer to the number of amino acid residues in the typical peptide in the indicated fraction. Column PolyHEA, 200 X 9.4 mm 5 /zm, 200 A. Flow rate 0.5 ml/min. Mobile phase 50 mtA Formic acid. Detection A250. Samples (A) Pancreatin hydrolyzate and (B) tryptic hydrolyzate. (Adapted from Ref. 29 with permission from Silvestre et of. Copyright 1994, American Chemical Society.)... 

Figure 9.10 Three-dimensional representation of the data volume of a tryptic digest of ovalbumin. Series of planar slices through the data volume produce stacks of disks in order to show peaks. Reprinted from Analytical Chemistry, 67, A. W. Moore Jr and J. W. Jorgenson, Comprehensive three-dimensional separation of peptides using size exclusion chromatogra-phy/reversed phase liquid chromatography/optically gated capillary zone electrophoresis, pp. 3456-3463, copyright 1995, with permission from the American Chemical Society.

Peptides formed during tryptic digest of Salmonella flagellin were immobilized on the WPG-PG to prepare immunoadsorbents for the isolation of monoreceptor antibodies from rabbit serum against H-antigens of Salmonella spp. [129]. The... 

Matrix-associated laser desorption ionization with a time-of-flight mass analyser (MALDl-ToF) was used to examine the crude tryptic peptide mixture from a number of the proteins, without HPLC separation, to provide a mass map, i.e. a survey of the molecular weights of the peptides generated by the digestion process. 

What are the advantages of using MALDl-ToF to examine the crude tryptic peptide mixture ... 

MALDI-ToF is a technique that allows the molecular weights of proteins and peptides to be determined. It is less susceptible to suppression effects than electrospray ionization and thus is able to be used for the direct analysis of mixtures. In the case of a crude tryptic digest, MALDI-ToF will provide a molecular weight profile of the polypeptides present without the analysis time being extended by the need to use some form of chromatographic separation. 

Figure 5.19 MALDI-ToF mass spectrum, providing a molecular-weight profile of the tryptic peptides derived from spot 22 (see Figure 5.18) of the silver-stained two-dimensional gel of the proteins extracted from the yeast S. cerevisiae. From Poutanen, M., Salusjarvi, L., Ruohonen, L., Penttila, M. and KaUddnen, N., Rapid Commun. Mass Spectrom., 15, 1685-1692, copyright 2001. John Wiley Sons Limited. Reproduced with permission.

Figure 5.23 Electrospray mass spectrum of the tryptic peptide with a retention time of 41.81 min from intact CMY-2 -lactamase. Reprinted from Biochim. Biophys. Acta, 1547, Bonomo, R. A., Liu, J., Chen, Y., Ng, L., Hujer, A. M. and Anderson, V. E., Inactivation of CMY-2 0-lactamase by tazobactam initial mass spectroscopic characterization , 196-205, Copyright (2001), with permission from Elsevier Science.

Figure 5.27 Selective detection of lactolated peptides from a tryptic digest of / -lacto-globulins by LC-electrospray-MS-MS, showing (a) the total-ion-cnrrent trace in full-scan mode, and (b) the total-ion-current trace in neutral-loss-scanning mode. Figure from Selective detection of lactolated peptides in hydrolysates by liquid chromatography/ electrospray tandem mass spectrometry , by Molle, D., Morgan, F., BouhaUab, S. and Leonil, J., in Analytical Biochemistry, Volume 259, 152-161, Copyright 1998, Elsevier Science (USA), reproduced with permission from the publisher.

Figure 5.31 LC-electrospray-MS-MS spectrum of the column eluate at around 22 min in the analysis of the peptide mixture from the tryptic digest of glycoprotein TIME-EA4 from silkworm diapause eggs. Reprinted from Bioorg. Med. Chem., 10, Kurahashi, T., Miyazaki, A., Murakami, Y., Suwan, S., Franz, T., Isobe, M., Tani, M. and Kai, H., Determination of a sugar chain and its linkage site on a glycoprotein TIME-EA4 from silkworm diapause eggs by means of LC-ESI-Q-TOF-MS and MS/MS , 1703-1710, Copyright (2002), with permission from Elsevier Science.

The soluble tryptic peptides of 130 mg a chain of Hb-St. Claude were separated on 0.9 x 60 cm columns of Chromobead resin type P (Technlcon Instruments, Dowex 50-X4) at 37°C using the procedure described earlier (16). The method uses a gradient of volatile pyrldlne-acetlc acid buffers of differing molarities and pH as follows first gradient, 666 ml 0.1 M, pH 3.1, and 333 ml 1.0 M, pH 5.0 and second gradient, 166 wl 1.0 M, pH 5.0, and 332 ml 2.0 M, pH 5.0. The amino acid composition of Isolated fragments was determined with a Splnco model 121 automated amino acid analyzer (Beckman Instruments)... 

Figure 16. Chromatographic separation of peptides of a tryptic hydrolysate of the a chain of Hb-St. Claude ona O.9 X O cm column of Chromo-bead resin type P at 37°C. The pH gradient is indicated by the broken line. T-1, T-2, etc. refer to the tryptic peptides and the numbers underneath to the positions in the chain. Several peptides are pure and give satisfactory analyses without further purification.

Tryptic peptides from a digest of 120 mg AE-3-chain were separated by Dowex 50-X4 chromatography the chromatogram Is depicted In Figure 18 Many peptides were eluted In single zones, but several occurred together. However, all peptides,... 

Figure 20. Chromatographic separation of thermolytic fragments of peptide T-9 isolated from the tryptic digest of the AE-p-chain of Hl Sheperds Bush. The Dowex 1-X2 column uxis 60 cm long and had an internal diameter of 0.6 cm. The pH gradient is indicated by the broken line. The fragments are identified bu their sequences and the positions they occupy in the p-chain. The sequence of the abnormal T-9 is given at the top of the figure.

Figure 5. Partial peptidic sequences of peptides resulting fi-om tryptic cleavage PME isoforms.

Fig. 3. (A) Disposition of afi unit in the membrane, based on sequence information [14,15], selective proteolytic digestion of the a subunit [5,6] and hydrophobic labelling (Table 1). The model for the (S subunit is based on sequencing of surface peptides and identification of S-S bridges [64,65]. T, T2 and C3 show location of proteolytic splits. CHO are glycosylated asparagines in the P subunit. (B) Peptide fragments remaining in the membrane after extensive tryptic digestion of membrane-bound Na,K-ATPase from outer medulla of pig kidney as described by Karlish et al. [7,58].

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