Peptide synthesis, enzyme-catalyzed

Peptide synthesis -enzyme-catalyzed [ENZYMES IN ORGANIC SYNTHESIS] (Vol 9)... 

Enzymatic peptide synthesis, enzyme-catalyzed synthesis, the application of enzymes for peptide bond formation. The very complex ribosomal peptidyl transferase center is not suitable as a catalyst for simple practical peptide synthesis. However, enzymes which usually act as hydrolases, catalyzing the cleavage of peptide bonds, should be considered as peptide ligases due to the principle of microscopic reversibility. The protease-catalyzed peptide synthesis has been developed as a useful tool in the new catalytic synthetic approach based on protease-engineering and the develop-... 

The third mechanism is represented by nonmodular one-step peptide synthesis. Enzymes belonging to this group catalyze the biosynthesis of poly(amino acids). Naturally occurring poly(amino acids) comprise cyanophy-cin [multi-L-arginyl-poly-(L-aspartic acid) cyanophycin granule polypeptide, (CGP)], (poly-(e-lysine) (PL), and poly-(y-glutamate) (PGA). As a consequence of non-ribosomal biosynthesis these peptides reveal a polydisperse mass distribution. 

There are two basic strategies for enzyme-catalyzed peptide synthesis equiUbrium- and kineticaHy controlled synthesis. The former is the direct reversal of proteolysis and involves the condensation of an amino component with unactivated carboxyl component. The latter proceeds by the aminolysis of an activated peptide ester. 

For the equiUbrium-controUed enzyme-catalyzed peptide synthesis the equiUbrium position Hes far over in the direction of the hydrolysis, and under physiological conditions, the product yield is negligible. The equiUbrium position is deterrnined exclusively by thermodynamic factors and like any other catalysts the enzymes only accelerate the attainment of the equiUbrium. 

Since the beginning of the 20th century, organic solvents have been used in enzymatic reaction media [30]. Biocatalytic reactions in water-organic biphasic media were first carried out by Cremonesi et al. [31] and by Buckland et al. [32] less than 30 years ago. Their work aimed at the conversion of high concentrations of poorly water soluble components, particularly steroids. Later, biphasic systems were used for enzyme-catalyzed synthesis reactions that were unfavored in water, changing the reaction equilibrium towards the higher yield of the product, such as esters or peptides. 

The suitability of the Aloe group for the construction of lipidated peptides is emphasized by the synthesis of the maleimidocaproyl-modified, S-palmi-toylated and farnesylated heptapeptide 16 which corresponds to the N-Ras C-terminus (Scheme 10).1211 In contrast to classical urethane-type protecting groups, the Aloe group can be removed in the presence of additional functional groups and under neutral conditions. It is therefore a very convenient protecting group for the synthesis of very hydro-phobic lipid-modified peptides, which are not soluble in the aqueous media required for enzyme catalyzed transformations. 

Virtually all biological reactions are stereospecific. This generalization applies not only to the enzyme-catalyzed reactions of intermediary metabolism, but also to the processes of nucleic acid synthesis and to the process of translation, in which the amino acids are linked in specific sequence to form the peptide chains of the enzymes. This review will be restricted mainly to some of the more elementary aspects of the stereospecificity of enzyme reactions, particularly to those features of chirality which have been worked out with the help of isotopes. 

It is interesting to note that serine peptidases can, under special conditions in vitro, catalyze the reverse reaction, namely the formation of a peptide bond (Fig. 3.4). The overall mechanism of peptide-bond synthesis by peptidases is represented by the reverse sequence f-a in Fig. 3.3. The nucleophilic amino group of an amino acid residue competes with H20 and reacts with the acyl-enzyme intermediate to form a new peptide bond (Steps d-c in Fig. 3.3). This mechanism is not relevant to the in vivo biosynthesis of proteins but has proved useful for preparative peptide synthesis in vitro [17]. An interesting application of the peptidase-catalyzed peptide synthesis is the enzymatic conversion of porcine insulin to human insulin [18][19]. 

This enzyme catalyzes the covalent insertion of a tyrosine at the C-terminal glutamate of the tubulin a subunit to effect the posttranslational synthesis of a peptide bond (Flavin et al., 1982 Thompson, 1982). The role of this modification reaction remains to be established... 

Stehle, P, Bahsitta, H. P., and Piirst, P. (1986). Analytical control of enzyme-catalyzed peptide-synthesis using capillary isotachophoresis.. Chromatogr. 370, 131—138. 

Use of Proteases in Peptide Synthesis. Typically peptides are synthesized the standard solid or liquid phase methodologies (56, 57). However, both of these techniques require harsh chemical reactions which are detrimental to certain amino acids. Furthermore, in practical terms most peptide syntheses are limited to the range of 30 to 50 amino acid residues. Hence, peptide synthesis is still somewhat problematic in many cases. In certain situations, the alternative method of peptide synthesis using proteases is an attractive choice. With this form of synthesis, one can avoid the use of the noxious and hazardous chemicals used in solid or liquid phase peptide synthesis. Since the reactions are enzyme catalyzed, racemization of the peptide bond does not occur. This technique has been used with success in the synthesis and semisynthesis of several important peptides including human insulin (55,59). 

As discussed above, proteases are peptide bond hydrolases and act as catalysts in this reaction. Consequently, as catalysts they also have the potential to catalyze the reverse reaction, the formation of a peptide bond. Peptide synthesis with proteases can occur via one of two routes either in an equilibrium controlled or a kinetically controlled manner 60). In the kinetically controlled process, the enzyme acts as a transferase. The protease catalyzes the transfer of an acyl group to a nucleophile. This requires an activated substrate preferably in the form of an ester and a protected P carboxyl group. This process occurs through an acyl covalent intermediate. Hence, for kineticmly controlled reactions the eii me must go through an acyl intermediate in its mechanism and thus only serine and cysteine proteases are of use. In equilibrium controlled synthesis, the enzyme serves omy to expedite the rate at which the equilibrium is reached, however, the position of the equilibrium is unaffected by the protease. 

An alternative to the synthesis of proteins by classical fragment synthesis in solution or by solid-phase synthesis on a support is the use of enzyme-catalyzed condensation of amino acids or peptides. This possibility was first demonstrated in 1938 91 with the synthesis of poorly soluble benzoyl-leucyl-leucine anilide by papain catalysis. After many years, this approach was extended to the preparation of peptide hormones such as Leu-enkephalin 92 and dynorphin(l -8).[93 This was made possible by the use of highly purified enzymes and by careful control of reaction conditions. The basic principles of protease-catalyzed peptide bond formation have been discussed.194 ... 

Proteins and enzymes have been successfully entrapped in surfactant-solubilized water pools in organic solvents [268-278]. Furthermore, many reversed-micelle-entrapped enzymes retained their activity and could be used for peptide synthesis [273,274]. That the water pools corresponding to very small w-values exhibited freezing points Mow — 50°C enabled both the enzyme structures and the rates of enzyme-catalyzed reactions to be investigated at low temperatures. These studies much aided the development of cryoenzymology [279, 180],... 

Biphasic systems have been effectively used in several enzyme-catalyzed reactions, including peptide and alkyl glycosides synthesis, esterification and transesterification, alcoholysis, hydrolysis, and enantiomeric resolution [2, 24, 60]. Although application of this particular bioconversion system has been used for final products, it is mostly used in the production of intermediate compounds, particularly optically active ones, that can be used as building blocks in the pharmaceutical and food sectors [61-64]. Updated reviews have addressed this matter [2, 4, 24, 60-63], and examples of some representative recent applications of this methodology are given in Table 8.1). 

To test the feasibility of enzyme-catalyzed enantiosective reactions in solid/gas reactors and to evaluate the efficiency of the resolution obtained in the gas phase compared to liquid systems, resolution of racemic 2-pentanol, catalyzed by CALB, through alcoholysis with methyl propanoate as acyl donor has been investigated in both liquid media and the gas phase [24]. As CALB has an enantiopreference for R enantiomers of secondary alcohols, this last reaction leads to S-2-Pentanol. This compound is a chiral intermediate in the synthesis of several potential anti-Alzheimer s drugs that inhibit 3-amyloid peptide release and/or its synthesis [25]. The degree of enantioselectivity was measured by using the enantiomeric ratio E, which is defined as the ratio of the specificity constants kcat/KM for the enantiomers (R/S in this case). E can be determined from the enantiomeric excess of... 

Both alkaline proteases form an intermediate, the acyl-enzyme complex, on the reaction coordinate from the amino acid component to the dipeptide, which is formed by the triad Ser-(or Cys-)-His-Asp (or -Glu) (see Chapter 9, Section 9.5). The acyl-enzyme complex can be formed with the help of an activated amino acid component such as an amino acid ester. The complex can react either with water to the undesired hydrolysis product, the free amino acid, or with the amine of the nucleophile, such as an amino acid ester or amide, to the desired dipeptide. The particular advantage of enzyme-catalyzed peptide synthesis rests in the biocatalyst specificity with respect to particular amino acids in electrophile and nucleophile positions. Figure 7.26 illustrates the principle of kinetically and thermodynamically controlled peptide synthesis while Table 7.3 elucidates the specificity of some common proteases. 

M. Erbeldinger, X. Ni, and P. J. Halling, Effect of water and enzyme concentration on thermolysin-catalyzed solid-to-solid peptide synthesis, Biotechnol. Bioeng. 1998, 59, 68-72. 

Peptide synthesis is an extremely important area of chemistry for the pharmaceutical industry, and like any specialized area of chemistry, has its own set of unique problems associated with it. Racemization and purification of final products are two of the most difficult problems in this area. The use of enzymes has been explored as a possible answer to these problems since 1938 [29]. However, proteases needed to catalyze peptide synthesis are subject to rapid autolysis under the conditions needed to affect peptide coupling, so this has generally not been a practical approach until cross-linked enzyme crystals of proteases became available. The synthetic utility of protease-CLCs was demonstrated by the thermolysin CLC (PeptiCLEC -TR)-catalyzed preparation of the aspartame precursor Z-... 

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