Pentose phosphate pathway intermediates

Phenylalanine, tyrosine, and tryptophan are synthesized by a common pathway in E. coli (Figure 24.13). The initial step is the condensation of phosphoenolpyruvate (a glycolytic intermediate) with erythrose 4-phosphate (a pentose phosphate pathway intermediate). The resulting seven-carbon open-chain sugar is oxidized, loses its phosphoryl group, and cyclizes to 3-dehydroquinate. Dehydration then yields 3-dehydroshikimate, which is reduced by N ADPH to shikimate. The phosphorylation of shikimate by ATP gives shikimate 3-phosphate, which condenses with a second molecule of phosphoenolpyruvate. The resulting 5-enolpyruvyl intermediate loses its... 

Guanosine triphosphate and ribulose-5-phosphate are recruited in a 1 2 stoichiometric ratio by GTP cyclohydrolase II and DHBP synthase, respectively, for riboflavin biosynthesis. Since at substrate saturation the activity of B. subtilis DHBP is twice the activity of B. suhtilis cyclohydrolase II (DSM, unpublished observations) and since both enzymatic activities are associated with the same bifunctional protein encoded by rihA, the balanced formation of the pyrimidinedione and the dihydroxybutanone intermediates is ensured. However, the ifg.s constant of DHBP synthase ( 1 mmol is about 100-fold higher than the ifg.s constant of GTP cyclohydrolase II imposing the risk of excessive synthesis of the pyrimidinone and pyrimidinedione intermediates in case of reduced intracellular concentrations of pentose phosphate pathway intermediates. This can be expected, for instance, in glucose-limited fed-batch fermentations, which are frequentiy used in industrial applications. The pyrimidinone and pyrimidinedione intermediates are highly reactive, oxidative compounds, which can do serious damage on the bacteria. 

See also Enzymes of the Pentose Phosphate Pathway, Intermediates of the Pentose Phosphate Pathway,... 

Ribose-5-phosphate is a pentose phosphate pathway intermediate produced by phosphopentose isomerase-catalyzed rearrangement of ribulose-5-phosphate. -i-j ... 

See also Pentose Phosphate Pathway, Pentose Phosphate Pathway Intermediate, Phosphopentose Isomerase, The Importance of PRPP... 

Huck, J. H. Struys, E. A. Verhoeven, N. M. Jakobs, C. van der Knaap, M. S. Profiling of pentose phosphate pathway intermediates in blood spots by tandem mass spectrometry application to transaldolase deficiency. Clin. Chem. 2003, 49, 1375-1380. 

Further improvement in production performance was achieved with a strain containing a tkt mutant allele (instead of the wild type) with drastically reduced enzymatic transketolase activity [180]. Transketolase is a key enzyme in the pentose phosphate pathway delivering ribulose-5-P and ribose-5-P, which are important building blocks for riboflavin biosynthesis. Presumably, the mutation impedes drainage of the pentose phosphate pathway intermediates back toward... 

This enzyme interconverts ribulose-5-P and ribose-5-P via an enediol intermediate (Figure 23.30). The reaction (and mechanism) is quite similar to the phosphoglucoisomerase reaction of glycolysis, which interconverts glucose-6-P and fructose-6-P. The ribose-5-P produced in this reaction is utilized in the biosynthesis of coenzymes (including N/ DH, N/ DPH, F/ D, and Big), nucleotides, and nucleic acids (DNA and RNA). The net reaction for the first four steps of the pentose phosphate pathway is... 

MORE NADPH THAN RmOSE-5-P IS NEEDED BY THE CELL Large amounts of N/VDPH can be supplied for biosynthesis without concomitant production of ribose-5-P, if ribose-5-P produced in the pentose phosphate pathway is recycled to produce glycolytic intermediates. As shown in Figure 23.39, this alternative involves a complex interplay between the transketolase and transaldolase reac-... 

The following compound is an intermediate in the pentose phosphate pathway, an alternative route for glucose metabolism. Identify the sugar it is derived from. 

A number of lyases are known which, unlike the aldolases, require thiamine pyrophosphate as a cofactor in the transfer of acyl anion equivalents, but mechanistically act via enolate-type additions. The commercially available transketolase (EC 2.2.1.1) stems from the pentose phosphate pathway where it catalyzes the transfer of a hydroxyacetyl fragment from a ketose phosphate to an aldehyde phosphate. For synthetic purposes, the donor component can be replaced by hydroxypyruvate, which forms the reactive intermediate by an irreversible, spontaneous decarboxylation. 

Derivatives of trioses, tetroses, and pentoses and of a seven-carbon sugar (sedohepmlose) are formed as meta-bohc intermediates in glycolysis and the pentose phosphate pathway. Pentoses are important in nucleotides. 

D-Ribose Nucleic acids. Structural elements of nucleic acids and coenzymes, eg, ATP, NAD, NADP, flavo-proteins. Ribose phosphates are intermediates in pentose phosphate pathway. ... 

Figure 25-7. Metabolism of adipose tissue. Hormone-sensitive lipase is activated by ACTH, TSH, glucagon, epinephrine, norepinephrine, and vasopressin and inhibited by insulin, prostaglandin E, and nicotinic acid. Details of the formation of glycerol 3-phosphate from intermediates of glycolysis are shown in Figure 24-2. (PPP, pentose phosphate pathway TG, triacylglycerol FFA, free fatty acids VLDL, very low density lipoprotein.)...

D-Xylulose 5-phosphate (ii-threo-2-pentulose 5-phosphate, XP) stands as an important metabolite of the pentose phosphate pathway, which plays a key fimction in the cell and provides intermediates for biosynthetic pathways. The starting compound of the pathway is glucose 6-phosphate, but XP can also be formed by direct phosphorylation of D-xylulose with li-xylulokinase. Tritsch et al. [114] developed a radiometric test system for the measurement of D-xylulose kinase (XK) activity in crude cell extracts. Aliquots were spotted onto silica plates and developed in n-propyl alcohol-ethyl acetate-water (6 1 3 (v/v) to separate o-xylose/o-xylulose from XP. Silica was scraped off and determined by liquid scintillation. The conversion rate of [ " C]o-xylose into [ " C]o-xylulose 5-phosphate was calculated. Some of the works devoted to the separation of components necessary while analyzing enzyme activity are presented in Table 9.8. 

Nevertheless, using GC-based technologies, the quantification of several important intermediates of central metabolism, especially phosphorylated intermediates, is not very reliable, presumably because these compounds and their derivatives are not thermostable. For an analysis of these groups of metabolites, an LC-MS (liquid chromatography or HPLC coupled to MS) is more suitable, because it eliminates the need for volatility and thermostability and thereby eliminates the need for derivatization. Using a triple quadrupole MS, most of the intermediates in glycolysis, in the pentose phosphate pathway, and in the tricarboxylic acid cycle were measured in E. coli [214]. 

A positive AG for this reaction conld also be achieved by a marked decrease in the concentration of glucose 6-phosphate. Why is this not feasible Glucose 6-phosphate is an important metabolic intermediate and is involved in several metabolic pathways (e.g. glycogen synthesis, glycolysis, pentose phosphate pathway). Lowering its concentration by the two orders of magnitude, which would be necessary, would markedly decrease the rates at which these important pathways could proceed. 

Phosphoric acid esters of the ketopentose D-ribulose (2) are intermediates in the pentose phosphate pathway (see p.l52) and in photosynthesis (see p.l28). The most widely distributed of the ketohexoses is D-fructose. In free form, it is present in fruit juices and in honey. Bound fructose is found in sucrose (B) and plant polysaccharides (e.g., inulin). 

Wamelink MM, Struys EA, Huck JH, Roos B, van der Knaap MS, Jakobs C, Verhoeven NM (2005) Quantification of sugar phosphate intermediates of the pentose phosphate pathway by LC-MS/MS application to two new inherited defects of metabolism. J Chromatogr Analyt Technol Biomed Life Sci 823 18-25... 

Comparison of the Reductive and Oxidative Pentose Phosphate Pathways The reductive pentose phosphate pathway generates a number of intermediates identical to those of the oxidative pentose phosphate pathway (Chapter 14). What role does each pathway play in cells where it is active ... 

All amino acids are derived from intermediates in glycolysis, the citric acid cycle, or the pentose phosphate pathway (Fig. 22-9). Nitrogen enters these pathways by way of glutamate and glutamine. Some pathways are simple, others are not. Ten of the amino acids are just one or several steps removed from the common metabolite from which they are derived. The biosynthetic pathways for others, such as the aromatic amino acids, are more complex. 

Glucose 6-phosphate is the key intermediate in carbohydrate metabolism. It may be polymerized into glycogen, dephosphorylated to blood glucose, or converted to fatty acids via acetyl-CoA. It may undergo oxidation by glycolysis, the citric acid cycle, and respiratory chain to yield ATP, or enter the pentose phosphate pathway to yield pentoses and NADPH. 

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