One-carbon units

AMP, ADP, and ATP = adenosine mono-, di-, and triphosphate IMP = inosine 5 -monophosphate AICAR = 5 -phosphoribosyl-5-amino-4-imida2olecarboxamide DAP = diaminopimelic acid PRPP = phosphoribosyl pyrophosphate a — KGA = a-ketoglutaric acid Orn = ornithine Cit = citnilline represents the one carbon unit lost to tetrahydrofolate as serine is converted to glycine. 

Mechanistic aspects of the action of folate-requiring enzymes involve one-carbon unit transfer at the oxidation level of formaldehyde, formate and methyl (78ACR314, 8OMI2I6OO) and are exemplified in pyrimidine and purine biosynthesis. A more complex mechanism has to be suggested for the methyl transfer from 5-methyl-THF (322) to homocysteine, since this transmethylation reaction is cobalamine-dependent to form methionine in E. coli. 

The role of the 1,1-bielectrophile in ring closures of this type is to provide a one-carbon unit (or heteroatbm) to close the cycle. Thus, the synthesis of the four-atom precursor with two nucleophilic centers 1,4 to each other is an appreciable challenge, especially to obtain a heterocycle at the desired oxidation level. The examples below illustrate the way this approach to synthesis may be gainfully utilized. 

Folic acid derivatives (folates) are acceptors and donors of one-carbon units for all oxidation levels of carbon except that of CO2 (where biotin is the relevant carrier). The active coenzyme form of folic acid is tetrahydrofolate (THF). THF is formed via two successive reductions of folate by dihydrofolate reductase (Figure 18.35). One-carbon units in three different oxidation states may be bound to tetrahydrofolate at the and/or nitrogens (Table 18.6). These one-carbon units... 

FIGURE 18.35 Formation of THF from folic acid by the dihydrofolate reductase reaction. The R group on these folate molecules symbolizes the one to seven (or more) glutamate units that folates characteristically contain. All of these glutamates are bound in y-carboxyl amide linkages (as in the folic acid structure shown in the box A Deeper Look Folic Acid, Pterins, and Insect VFingis). The one-carbon units carried by THF are bound at N, or at or as a single carbon attached to both... 

Tetrahydrofolic acid (H PteGlu) accqrts and transfers activated one-carbon units in the form of 5-methyl-,... 

The water-soluble vitamins comprise the B complex and vitamin C and function as enzyme cofactors. Fofic acid acts as a carrier of one-carbon units. Deficiency of a single vitamin of the B complex is rare, since poor diets are most often associated with multiple deficiency states. Nevertheless, specific syndromes are characteristic of deficiencies of individual vitamins, eg, beriberi (thiamin) cheilosis, glossitis, seborrhea (riboflavin) pellagra (niacin) peripheral neuritis (pyridoxine) megaloblastic anemia, methyhnalonic aciduria, and pernicious anemia (vitamin Bjj) and megaloblastic anemia (folic acid). Vitamin C deficiency leads to scurvy. 

Entries 3 to 5 show the use of alternative sources of the one carbon unit. In Entry 3, a tertiary alcohol is formed with one of the alkyl groups being derived from the dithioacetal reagent. Related procedures have been developed for ketones and tertiary alcohols using 2-lithio-2-alkyl-l,3-benzothiole as the source of the linking carbon.14 Problem 9.3 deals with the mechanisms of these reactions. 

DHFR has been the object of intense research for the last few decades. The enzyme catalyses the NADPH-dependent reduction of 7,8-dihydrofolate to 5,6,7,8 tetrahydrofolate, a chemical which participates in the thymidilate synthesis cycle. Thus, the enzyme is crucial in the synthesis of thymidine monophosphate as well as in various one-carbon unit transfer reactions. 

This novel electroreductive cyclocoupling corresponds to a 1,4-addition of a one-carbon unit to the 1,3-diene, and does not take place without using magnesium electrode. The first step in this coupling reaction is the cathodic reduction of 1,3-diene to an anion radical, and the second step is the formation of a Mg-diene complex, which thereafter reacts with the ester to yield the coupling product as shown in equation 23b. 

One-carbon units in different oxidation states are required in the pathways producing purines, thymidine, and many other compounds. When a biochemical reaction requires a methyl group (methylation), S-adenos dmethionme (SAM) is generally the methyl donor. If a one-carbon unit in another oxidation state is required (methylene, methenyl, formyl), tetrahydrofolate (THF) typically serves as its donor. 

TFIF is formed from the vitamin folate through two reductions catalyzed by dihydrofolate reductase shown in Figure 1-17-4. It picks up a one-carbon unit from a variety of donors and enters the active one-carbon pool. Important pathways lequirii forms of THF from this pool include the synthesis of all purines and thymidine, wfakh in turn are used for DNA and RNA synthesis during cell growth and division. 

Folic acid is a vitamin, as we developed in chapter 15. It is a complex molecule that serves as an essential precursor for coenzymes involved in the metabolism of one-carbon units. For example, folic acid-derived coenzymes are critically involved in the biosynthesis of thymidine for nucleic acid synthesis and methionine for protein biosynthesis. The synthesis of both demands donation of a methyl group and they come from folic acid-derived coenzymes. 

A major class of enzymes that catalyze the transfer of a group or moiety from one compound to another. The groups being transferred can be one-carbon units such as methyl, hydroxyhnethyl, carbamoyl, or amidino moieties. Enzymes transferring aldehyde or ketonic groups such as transketolase are members of this class. Other examples include acyltransferases, glycosyltransferases, aminotransferases, phosphotransferases, and sulfotrans-ferases. 

Figure 10-5. Conversion of deoxyuridylate (dUMP) to deoxythymidylate (dTMP) by thymidylate synthetase. The importance of folate coenzymes in this reaction is illustrated. NADPH + H provide the necessary reducing equivalents and serine is the source of one-carbon units present on N, N °-methylene tetrahydrofolate (THF).

Saa and coworkers reported a remarkable cycloisomerization of alkynal to cycloalk-ene derivatives with loss of a CO molecule [30] some examples are shown in Table 6.3. Heating 5-alkynal 94a in AcOH (90 °C, 24h) with [Ru(Cp)(CH3CN)3]PF6 (5 mol%) afforded the cyclopentene derivative 9Sa in 90% yield. Ketone 94e afforded the cyclopentene 9Se in moderate yield, whereas the ester 94f gave the noncyclized product 96 with loss of one carbon unit (Table 6.3) (Scheme 6.32). 

Both sulfonamides and trimethoprim (not a sulfonamide) sequentially interfere with folic acid synthesis by bacteria. Folic acid functions as a coenzyme in the transfer of one-carbon units required for the synthesis of thymidine, purines, and some amino acids and consists of three components a pteridine moiety, PABA, and glutamate (Fig. 44.1). The sulfonamides, as structural analogues, competitively block PABA incorporation sulfonamides inhibit the enzyme dihydropteroate synthase, which is necessary for PABA to be incorporated into dihydropteroic acid, an intermediate compound in the formation of folinic acid. Since the sulfonamides reversibly block the synthesis of folic acid, they are bacteriostatic drugs. Humans cannot synthesize folic acid and must acquire it in the diet thus, the sulfonamides selectively inhibit microbial growth. 

The only antimalarial drugs whose mechanisms of action are reasonably well understood are the drugs that inhibit the parasite s ability to synthesize folic acid. Parasites cannot use preformed folic acid and therefore must synthesize this compound from the following precursors obtained from their host p-aminobenzoic acid (PABA), pteridine, and glutamic acid. The dihydrofolic acid formed from these precursors must then be hydrogenated to form tetrahydrofoUc acid. The latter compound is the coenzyme that acts as an acceptor of a variety of one-carbon units. The transfer of one-carbon units is important in the synthesis of the pyrimidines and purines, which are essential in nucleic acid synthesis. 

Folic Acid Antagonists. Folic acid antagonists block the biosynthesis of purine nucleotides. Methotrexate (7.76) is the prototypic fohc acid antagonist and functions by binding to the active catalytic site of dihydrofolate reductase, thereby interfering with the synthesis of the reduced form that accepts one-carbon units lack of this cofactor blocks the synthesis of purine nucleotides. As well as being used in the treatment of cancer, methotrexate has been used in the management of rheumatoid arthritis, psoriasis, and even asthma. 

In addition, tetrahydrofolate cofactors donate one-carbon units during the de novo synthesis of essential purines. In these reactions, tetrahydrofolate is regenerated and can reenter the tetrahydrofolate cofactor pool. 

Conversion of dUMP to dTMP is catalyzed by thy-midylate synthase. A one-carbon unit at the hydroxymethyl (—CH2OH) oxidation level (see Fig. 18-17) is transferred from Af5,Af10-methylenetetrahydrofolate to dUMP, then reduced to a methyl group (Fig. 22-44). The reduction occurs at the expense of oxidation of tetrahydrofolate to dihydrofolate, which is unusual in tetrahydrofolate-requiring reactions. (The mechanism of this reaction is shown in Fig. 22-50.) The dihydrofolate is reduced to tetrahydrofolate by dihydrofolate reductase—a regeneration that is essential for the many processes that require tetrahydrofolate. In plants and at least one protist, thymidylate synthase and dihy-drofolate reductase reside on a single bifunctional protein. 

Serine can be converted to glycine and N5,N10-methylenetetra-hydrofolate (Figure 20.6A). Serine can also be converted to pyru vate by serine dehydratase (Figure 20.6B). [Note The role of tetrahydrofolate in the transfer of one-carbon units is presented on p. 265.]... 

Some synthetic pathways require the addition of single carbon groups. These "one-carbon units can exist in a variety of oxidation states. These include methane, methanol, formaldehyde, formic acid, and carbonic acid. It is possible to incorporate carbon units at each of these... 

The active form of folic acid, tetrahydrofolic acid (THF), is produced from folate by dihydrofolate reductase in a two-step reaction requiring two moles of NADPH. The carbon unit carried by THF is bound to nitrogen N5 or N10, or to both N5 and N10. THF allows one-carbon compounds to be recognized and manipulated by biosynthetic enzymes. Figure 20.11 shows the structures of the various members of the THF family, and indicates the sources of the one-carbon units and the synthetic reactions in which the specific members participate. 

Folic acid — Tetrahydro-folic acid Transfer one-carbon units 1 Synthesis of methionine, purines, and thymine 1... 

Folic acid s active form is tetrahydrofolic acid. Its function is to transfer one-carbon units... 

---