Nitrogenase MoFe protein substrate binding site

The so-called midpoint potential, Em, of protein-bound [Fe-S] clusters controls both the kinetics and thermodynamics of their reactions. Em may depend on the protein chain s polarity in the vicinity of the metal-sulfur cluster and also upon the bulk solvent accessibility at the site. It is known that nucleotide binding to nitrogenase s Fe-protein, for instance, results in a lowering of the redox potential of its [4Fe-4S] cluster by over 100 mV. This is thought to be essential for electron transfer to MoFe-protein for substrate reduction.11 3... 

Nitrogenase catalyzes the reduction of a number of substrates in addition to N2 and H+. Acetylene is reduced to ethylene, and nitrous oxide to dinitrogen, while azide undergoes reduction to N2 and NH3. In the last two cases the product N2 is not reduced further, implying that it is not in the correct binding position for reduction. The presence of multiple sites on the MoFe protein suggested by this observation is also supported by the non-competitive nature of the inhibition shown by some of these compounds. The reduction of acetylene has been used as a marker reaction for nitrogenase activity. 

When FeMoco extracted from MoFe protein purified from a nifV mutant is recombined with apo-MoFe protein, the activated protein has the substrate-reducing characteristics of the nifV enzyme (reduces C2H2 effectively but N2 only poorly). This observation provides the most compelling evidence that FeMoco is, or forms part of, the active site of nitrogenase. Site-directed mutagenesis has implicated one of the conserved Cys residues of the a subunit Cys 275 in binding FeMoco, and also His 196 and Gin 192 (see Refs. 17 and 38 for discussion). 

Nitrogenase, as must now become clear, is a complex enzyme of two component proteins which requires ATP, a reductant, a reducible substrate, Mg " " as an activator, and an anaerobic environment to function. To this complexity must be added the difficulty that the component proteins have no enzymatic half reactions . There are, perhaps, four main questions to decide about the mechanism (1) the role(s) of the two component proteins (2) the role(s) of ATP (3) the nature of the active site(s) and (4) the mechanism of N2 reduction. Despite the complexities and difficulties mentioned above, progress in the last 15 years has partly answered all these questions. The Fe protein mediates an ATP-dependent electron transfer from the donor to the MoFe protein which contains the active site. MgATP binds and induces a conformational change in the Fe protein which lowers its redox potential. FeMoco, the molybdenum cofactor, which may be part of the active site of N2 reduction, has been isolated and partly characterized, while an intermediate in N2 reduction has recently been discovered (Thorneley ct al., 1978). The next part of this chapter describes the evidence for these claims. This evidence involves the noncatalytic reactions of the individual proteins, their... 

The electron-transfer P-cluster and the catalytic FeMo-cofactor of the MoFe-protein of nitrogenase have been assembled only by biosynthesis. Whereas the P-cluster most likely participates in interprotein electron transfer, the FeMo-cofactor is the active site of substrate binding and reduction [43-46,48-51]. 

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