Molecular rotation polyatomic molecules

In the case of a polyatomic molecule, rotation can occur in three dimensions about the molecular center of mass. Any possible mode of rotation can be expressed as projections on the three mutually perpendicular axes, x, y, and z hence, three moments of inertia are necessar y to give the resistance to angular acceleration by any torque (twisting force) in a , y, and z space. In the MM3 output file, they are denoted IX, lY, and IZ and are given in the nonstandard units of grams square centimeters. 

I. N. Levine (1975) Molecular Spectroscopy (John Wiley Sons, New York). A survey of the theory of rotational, vibrational, and electronic spectroscopy of diatomic and polyatomic molecules and of nuclear magnetic resonance spectroscopy. 

The Section on Molecular Rotation and Vibration provides an introduction to how vibrational and rotational energy levels and wavefunctions are expressed for diatomic, linear polyatomic, and non-linear polyatomic molecules whose electronic energies are described by a single potential energy surface. Rotations of "rigid" molecules and harmonic vibrations of uncoupled normal modes constitute the starting point of such treatments. 

Molecular rotation In a normal crystal every atom occupies a precise mean position, about which it vibrates to a degree depending on the temperature molecules or polyatomic ions have precisely defined orientations as well as precise mean positions. When such a crystal is heated, the amplitude of the thermal vibrations of the atoms increases with the temperature until a point is reached at which the regular structure breaks down, that is, the crystal melts. But in a few types of crystal it appears that notation of molecules or polyatomic... 

Although we will not provide a derivation, the molecular rotational partition function for a general polyatomic molecule is also simple in form,... 

In Section 5.1, we noted that to a good approximation the nuclear motion of a polyatomic molecule can be separated into translational, vibrational, and rotational motions. If the molecule has N nuclei, then the nuclear wave function is a function of 3/V coordinates. The translational wave function depends on the three coordinates of the molecular center of mass in a space-fixed coordinate system. For a nonlinear molecule, the rotational wave function depends on the three Eulerian angles 9, principal axes a, b, and c with respect to a nonrotating set of axes with origin at the center of mass. For a linear molecule, the rotational quantum number K must be zero, and the wave function (5.68) is a function of 6 and only only two angles are needed to specify the orientation of a linear molecule. Thus the vibrational wave function will depend on 3N — 5 or 3N — 6 coordinates, according to whether the molecule is linear or nonlinear we say there are 3N — 5 or 3N — 6 vibrational degrees of freedom. 

Analysis of the rotational fine structure of IR bands yields the moments of inertia 7°, 7°, and 7 . From these, the molecular structure can be fitted. (It may be necessary to assign spectra of isotopically substituted species in order to have sufficient data for a structural determination.) Such structures are subject to the usual errors due to zero-point vibrations. Values of moments of inertia determined from IR work are less accurate than those obtained from microwave work. However, the pure-rotation spectra of many polyatomic molecules cannot be observed because the molecules have no permanent electric dipole moment in contrast, all polyatomic molecules have IR-active vibration-rotation bands, from which the rotational constants and structure can be determined. For example, the structure of the nonpolar molecule ethylene, CH2=CH2, was determined from IR study of the normal species and of CD2=CD2 to be8... 

The results of theoretical potential calculations (18, 19) suggest considerable energetic heterogeneity within the zeolite cavities. In such calculations the probe molecule is, however, represented as a point center of force, and for polyatomic molecules the effect of molecular rotation will reduce any such variations in potential through the cavity. For such systems the idealized model, which assumes a uniform potential throughout the free volume, may not be too unrealistic. 

McKean 182> considered the matrix shifts and lattice contributions from a classical electrostatic point of view, using a multipole expansion of the electrostatic energy to represent the vibrating molecule and applied this to the XY4 molecules trapped in noble-gas matrices. Mann and Horrocks 183) discussed the environmental effects on the IR frequencies of polyatomic molecules, using the Buckingham potential 184>, and applied it to HCN in various liquid solvents. Decius, 8S) analyzed the problem of dipolar vibrational coupling in crystals composed of molecules or molecular ions, and applied the derived theory to anisotropic Bravais lattices the case of calcite (which introduces extra complications) is treated separately. Freedman, Shalom and Kimel, 86) discussed the problem of the rotation-translation levels of a tetrahedral molecule in an octahedral cell. 

The principal reaction discussed above forms oxygen molecules in high vibrational levels of the ground state. This is chemi-excitation but is not chemiluminescence vibration-rotation transitions of homonuclear molecules are forbidden. For such cases electronic absorption spectroscopy is the required technique. For reactions in which a heteronuclear diatomic (or a polyatomic) molecule is excited these transitions are allowed. They are overtones of the molecular transitions that occur in the near infrared. These excited products emit spontaneously. The reactions are chemiluminescent, their emission spectra may be obtained and analyzed in order to deduce the detailed course of the reaction. 

An interesting development in molecular rotational relaxation has been the microwave double-resonance method176-178. The technique permits the exploration of the fine detail of the processes which occur in collisions of polyatomic molecules, and results for a number of symmetric tops have been reported. For example, Oka has described experiments on NH3 in which inversion doublets for selected J values were pumped by high microwave power. Pumping disturbs the population of the inversion doublet, and also that of other doublets which are populated from the original pair by collision processes. By absorption measurements of other inversion doublets with steady state irradiation, Oka has shown that in NH3/NH3 collisions, transitions which are allowed by the electric dipole selection rules (A/ = 0, 1, + - —) are preferred. Oka s analysis indicates that relaxation is most favourable in collision with molecules having similar J values, which are termed rotational resonances (R-R transfer). For example the process... 

Transitions between electronic states are formally equivalent to transitions between different vibrational or rotational states which were amply discussed in Chapters 9 11. Computationally, however, they are much more difficult to handle because they arise from the coupling between electronic and nuclear motions. The rigorous description of electronic transitions in polyatomic molecules is probably the most difficult task in the whole field of molecular dynamics (Siebrand 1976 Tully 1976 Child 1979 Rebentrost 1981 Baer 1983 Koppel, Domcke, and Cederbaum 1984 Whetten, Ezra, and Grant 1985 Desouter-Lecomte et al. 1985 Baer 1985b Lefebvre-Brion and Field 1986 Sidis 1989a,b Coalson 1989). The reasons will become apparent below. The two basic approaches, the adiabatic and the diabatic representations, will be outlined in Sections 15.1 and 15.2, respectively. Two examples, the photodissociation of CH3I and of H2S, will be discussed in Section 15.3. 

Photodissociation of small polyatomic molecules is an ideal field for investigating molecular dynamics at a high level of precision. The last decade has seen an explosion of many new experimental methods which permit the study of bond fission on the basis of single quantum states. Experiments with three lasers — one to prepare the parent molecule in a particular vibrational-rotational state in the electronic ground state, one to excite the molecule into the continuum, and finally a third laser to probe the products — are quite usual today. State-specific chemistry finally has become reality. The understanding of such highly resolved measurements demands theoretical descriptions which go far beyond simple models. 

Gandhi, S.R., Xu, Q.X., Curtis, T.J. and Bernstein, R.B. (1987). Oriented molecular beams focused beam of rotationally cold polar polyatomic molecules, J. Chem. Phys., 91, 5437-5441. 

The harmonic approximation reduces to assuming the PES to be a hyperparaboloid in the vicinity of each of the local minima of the molecular potential energy. Under this assumption the thermodynamical quantities (and some other properties) can be obtained in the close form. Indeed, for the ideal gas of polyatomic molecules the partition function Q is a product of the partition functions corresponding to the translational, rotational, and vibrational motions of the nuclei and to that describing electronic degrees of freedom of an individual molecule ... 

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