Molecular dynamics condensed phases

Radiation probes such as neutrons, x-rays and visible light are used to see the structure of physical systems tlirough elastic scattering experunents. Inelastic scattering experiments measure both the structural and dynamical correlations that exist in a physical system. For a system which is in thennodynamic equilibrium, the molecular dynamics create spatio-temporal correlations which are the manifestation of themial fluctuations around the equilibrium state. For a condensed phase system, dynamical correlations are intimately linked to its structure. For systems in equilibrium, linear response tiieory is an appropriate framework to use to inquire on the spatio-temporal correlations resulting from thennodynamic fluctuations. Appropriate response and correlation functions emerge naturally in this framework, and the role of theory is to understand these correlation fiinctions from first principles. This is the subject of section A3.3.2. 

Wang W, Nelson K A, Xiao L and Coker D F 1994 Molecular dynamics simulation studies of solvent cage effects on photodissociation in condensed phases J. Chem. Phys. 101 9663-71... 

With the wealth of infonnation contained in such two-dimensional data sets and with the continued improvements in technology, the Raman echo and quasi-echo techniques will be the basis for much activity and will undoubtedly provide very exciting new insights into condensed phase dynamics in simple molecular materials to systems of biological interest. 

Ddnweg B 1996 Simulation of phase transitions critical phenomena Monte Carlo and Molecular Dynamics of Condensed Matter Systems vol 49, ed K Binder and G Ciccotti (Bologna Italian Physical Society) pp 215-54... 

Ciccotti G and Ferrario M 1998 Constrained and nonequilibrium molecular dynamics Classical and Quantum Dynamics In Condensed Phase Simulations ed B J Berne, G Ciccotti and D F Coker (Singapore World Scientific) pp 157-77... 

The scope of this section restricts the discussion. One omitted topic is the collision and interaction of molecules with surfaces (see [20, 21] and section A3.9). This topic coimects quantum molecular dynamics in gas and condensed phases. Depending on the time scales of the interaction of a molecule witli a surface, the... 

The most important molecular interactions of all are those that take place in liquid water. For many years, chemists have worked to model liquid water, using molecular dynamics and Monte Carlo simulations. Until relatively recently, however, all such work was done using effective potentials [4T], designed to reproduce the condensed-phase properties but with no serious claim to represent the tme interactions between a pair of water molecules. 

Chemical reaction dynamics is an attempt to understand chemical reactions at tire level of individual quantum states. Much work has been done on isolated molecules in molecular beams, but it is unlikely tliat tliis infonnation can be used to understand condensed phase chemistry at tire same level [8]. In a batli, tire reacting solute s potential energy surface is altered by botli dynamic and static effects. The static effect is characterized by a potential of mean force. The dynamical effects are characterized by tire force-correlation fimction or tire frequency-dependent friction [8]. 

Bash, P.A., Field, M.J.,Karplus, M. Free energy perturbation method for chemical reactions in the condensed phase A dynamical approach baaed on a combined quantum and molecular dynamics potential. J. Am. Chem. Soc. 109 (1987) 8092-8094. 

The first molecular dynamics simulation of a condensed phase system was performed by Alder and Wainwright in 1957 using a hard-sphere model [Alder and Wainwright 1957]. In this model, the spheres move at constant velocity in straight lines between collisions. All collisions are perfectly elastic and occur when the separation between the centres of... 

Statistical mechanics computations are often tacked onto the end of ah initio vibrational frequency calculations for gas-phase properties at low pressure. For condensed-phase properties, often molecular dynamics or Monte Carlo calculations are necessary in order to obtain statistical data. The following are the principles that make this possible. 

Units and Concentration. In the gaseous as well as the condensed phases, molecular concentration by molecular species is of prime importance. By convention, total pressure in a MaxweUian gas is used as though it indicates the quaUty of the vacuum and as though MaxweUian gases were the rule rather than the exception (12). In general, in dynamic systems, gas pressure (or its partial pressure components) is neither isotropic nor an adequate indicator of molecular significance. 

Luminescence lifetime spectroscopy. In addition to the nanosecond lifetime measurements that are now rather routine, lifetime measurements on a femtosecond time scale are being attained with the intensity correlation method (124), which is an indirect technique for investigating the dynamics of excited states in the time frame of the laser pulse itself. The sample is excited with two laser pulse trains of equal amplitude and frequencies nl and n2 and the time-integrated luminescence at the difference frequency (nl - n2 ) is measured as a function of the relative pulse delay. Hochstrasser (125) has measured inertial motions of rotating molecules in condensed phases on time scales shorter than the collision time, allowing insight into relaxation processes following molecular collisions. 

The studies of molecular dynamics is now not only limited to the systems of atom and small molecules in dilute gas phase, the intense current interest is occurring in the condensed phase, i.e. in liquid solutions and in the solid state. 

In recent years, there have been many significant advances in our models for the dynamics for proton transfer. However, only a limited number of experimental studies have served to probe the validity of these models for bimolecular systems. The proton-transfer process within the benzophenone-AL A -di methyl aniline contact radical IP appears to be the first molecular system that clearly illustrates non-adiabatic proton transfer at ambient temperatures in the condensed phase. The studies of Pines and Fleming on napthol photoacids-carboxylic base pairs appear to provide evidence for adiabatic proton transfer. Clearly, from an experimental perspective, the examination of the predictions of the various theoretical models is still in the very early stages of development. 

The Relation of VPIE to Condensed Phase Molecular Properties and Vibrational Dynamics... 

---