Modeling polarization effects

MODELING POLARIZATION EFFECTS Induced Dipole Models... 

The effective dielectric constant can be included to model the effect of surrounding molecules (solvent) and the fact that interactions between distant sites may be through part of the same molecule, i.e. a polarization effect. A value of 1 for e... 

The distance of each reflection from the center of the pattern is a function of the fiber-to-film distance, as well as the unit-cell dimensions. Therefore, by measuring the positions of the reflections, it is possible to determine the unit-cell dimensions and, subsequently, index (or assign Miller indices to) all the reflections. Their intensities are measured with a microdensitometer or digitized with a scanner and then processed.8-10 After applying appropriate geometrical corrections for Lorentz and polarization effects, the observed structure amplitudes are computed. This experimental X-ray data set is crucial for the determination and refinement of molecular and packing models, and also for the adjudication of alternatives. 

In summary, all the experiments expressly selected to check the theoretical description provided fairly clear evidence in favour of both the basic electronic model proposed for the BMPC photoisomerization (involving a TICT-like state) and the essential characteristics of the intramolecular S and S, potential surfaces as derived from CS INDO Cl calculations. Now, combining the results of the present investigation with those of previous studies [24,25] we are in a position to fix the following points about the mechanism and dynamics of BMPC excited-state relaxation l)photoexcitation (So-Si)of the stable (trans) form results in the formation of the 3-4 cis planar isomer, as well as recovery of the trans one, through a perpendicular CT-like S] minimum of intramolecular origin, 2) a small intramolecular barrier (1.-1.2 kcal mol ) is interposed between the secondary trans and the absolute perp minima, 3) the thermal back 3-4 cis trans isomerization requires travelling over a substantial intramolecular barrier (=18 kcal moM) at the perp conformation, 4) solvent polarity effects come into play primarily around the perp conformation, due to localization of the... 

Ossikovski, R., Nguyen, Q. and Picardi, G. (2007) Simple model for the polarization effects in tip-enhanced Raman spectroscopy. Phys. Rev. B, 75, 045412-1-045412-9. 

The theoretical approach by Samec based on the ion-free compact layer model established that the true apparent transfer coefficient is obtained after correction for concentration polarization effect [1] [see Eq. (14)]. Subsequent studies by Samec and coworkers on the ferricyanide-Fc system provided values of a smaller than the expected 0.5. Preliminary attempts to rationalize this behavior were based on defining effective interfacial charges and separation distance between reactants [79]. The inconclusive trends reported in these studies were ascribed to complications arising from ion pairing of the ferro/ferricyanide ions. Later analysis of the same system appeared to show that k i is... 

Heteroatom substituents also introduce polar effects. In the case of a-alkoxy aldehydes the preferred TS appears to be F and G for the E- and Z-enolates, respectively. These differ from the normal Felkin TS for nucleophilic addition. The reactant conformation is believed to be determined by minimization of dipolar repulsion between the alkoxy substituent and the carbonyl group.96 This model predicts higher 3,4-anti ratios for Z-enolates, and this is observed. 

An ab initio MO calculation by Jorgensen revealed enhanced hydrogen bonding of a water molecule to the transition states for the Diels-Alder reactions of cyclopentadiene with methyl vinyl ketone and acrylonitrile, which indicates that the observed rate accelerations for Diels-Alder reactions in aqueous solution arise from the hydrogenbonding effect in addition to a relatively constant hydrophobic term.7,76 Ab initio calculation using a self-consistent reaction field continuum model shows that electronic and nuclear polarization effects in solution are crucial to explain the stereoselectivity of nonsymmetrical... 

Abstract Current methodologies for modelling electronic polarization effects in empirical force... 

The QM/MM and ab initio methodologies have just begun to be applied to challenging problems involving ion channels [73] and proton motion through them [74]. Reference [73] utilizes Hartree-Fock and DFT calculations on the KcsA channel to illustrate that classical force fields can fail to include polarization effects properly due to the interaction of ions with the protein, and protein residues with each other. Reference [74] employs a QM/MM technique developed in conjunction with Car-Parrinello ab initio simulations [75] to model proton and hydroxide ion motion in aquaporins. Due to the large system size, the time scale for these simulations was relatively short (lOps), but the influences of key residues and macrodipoles on the short time motions of the ions could be examined. 

Calculations of forces may be improved in several ways. One is to pursue efforts towards the development of accurate classical, atomic-level force fields. A promising extension along these lines is to add nonadditive polarization effects to the usual pairwise additive description of interatomic interactions. This has been attempted in the past [35-39], but has not brought the expected and long-awaited improvements. This is not so much because polarization effects are not important, or pairwise additive models can account for them accurately in an average sense in all, even highly anisotropic environments. Instead, it seems more likely that the previously developed nonadditive potentials were not sufficiently accurate to offer an enhanced description of those systems in which induction phenomena play a crucial role. 

The most convincing evidence for the BC model of Mu in III-V materials comes from the nuclear hyperfine structure in GaAs. The hyperfine parameters for the nearest-neighbor Ga and As on the Mu symmetry axis and the corresponding s and p densities are given in Table I. One finds a total spin density on the As(Ga) of 0.45 (0.38) with the ratio of p to 5 density of 23 (4) respectively. The fact that 83% of the spin density is on the two nearest-neighbor nuclei on the Mu symmetry axis agrees with the expectations of the BC model. From the ratios of p to s one can estimate that the As and Ga are displaced 0.65 (17) A and 0.14(6) A, respectively, away from the bond center. The uncertainties of these estimates were calculated from spin polarization effects, which are not known accurately, and they do not reflect any systematic uncertainties in the approximation. These displacements imply an increase in the Ga—As bond of about 32 (7)%, which is similar to calculated lattice distortions for Mu in diamond (Claxton et al., 1986 Estle et al., 1986 Estle et al., 1987) and Si (Estreicher, 1987). 

The polar effect involved in radical addition has been repeatedly discussed in the scientific literature. The parabolic model opens up new prospects for the correct estimation of the polar effect (see Section 6.2.7). It permits one to determine the contribution of this effect to the activation energy using experimental data. This contribution (AE ) is estimated by choosing a reference reaction that involves the same reaction center but in which one or both reactants... 

The comparisons made by Parchment et al. [271] illustrate the importance of combining electronic polarization effects with corrections for specific solvation effects. The latter are accounted for parametrically by the explicit simulation, but that procedure cannot explicitly account for the greater polarizability of tautomer 8. The various SCRF models do indicate 8 to be more polarizable than any of the other tautomers, but polarization alone is not sufficient to shift the equilibrium to that experimentally observed. Were these two effects to be combined in a single theoretical model, a more accurate prediction of the experimental equilibrium would be expected. 

The exp-6 model is not well suited to molecules with large dipole moments. To account for this, Ree9 used a temperature-dependent well depth e(T) in the exp-6 potential to model polar fluids and fluid phase separations. Fried and Howard have developed an effective cluster model for HF.33 The effective cluster model is valid for temperatures lower than the variable well-depth model, but it employs two more adjustable parameters than does the latter. Jones et al.34 have applied thermodynamic perturbation theory to... 

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