Methylmalonyl-succinyl

Darbre T, Keese R, Siljegovic V, WollebGygi A. Model studies for the coenzyme-B-12-catalyzed methylmalonyl-succinyl rearrangement. The importance of hydrophobic peripheral associations. Helv. Chim. Acta. 1996 79 2100-2113. 

Wolleb-Gygi A, Darbre T, SUjegovic V, Keese R (1994) The importance of praipheral association for vitamin B12 catalysed methylmalonyl-succinyl-rearrangement. Chem Commun 7 835—836... 

Fatty acids with odd numbers of carbon atoms are rare in mammals, but fairly common in plants and marine organisms. Humans and animals whose diets include these food sources metabolize odd-carbon fatty acids via the /3-oxida-tion pathway. The final product of /3-oxidation in this case is the 3-carbon pro-pionyl-CoA instead of acetyl-CoA. Three specialized enzymes then carry out the reactions that convert propionyl-CoA to succinyl-CoA, a TCA cycle intermediate. (Because propionyl-CoA is a degradation product of methionine, valine, and isoleucine, this sequence of reactions is also important in amino acid catabolism, as we shall see in Chapter 26.) The pathway involves an initial carboxylation at the a-carbon of propionyl-CoA to produce D-methylmalonyl-CoA (Figure 24.19). The reaction is catalyzed by a biotin-dependent enzyme, propionyl-CoA carboxylase. The mechanism involves ATP-driven carboxylation of biotin at Nj, followed by nucleophilic attack by the a-carbanion of propi-onyl-CoA in a stereo-specific manner. 

A Bi9-Catalyzed Rearrangement Yields Succinyl-CoA from L-Methylmalonyl-CoA... 

Methylmalonyl-CoA mutase 5 -deoxyadenosylco-balamin is part of dimethylbenzimidazolecobamide coenzyme, a constituent of methylmalonyl-CoA mutase. This mutase catalyses the isomerization of methylmalonyl-CoA to succinyl-CoA (anaplerotic reaction of the citric acid cycle). 

Succinyl-coenzyme A H -COSR COOH L-Methylmalonyl coenzyme ... 

Methylmalonyl-CoA mutase (MCM) catalyzes a radical-based transformation of methylmalonyl-CoA (MCA) to succinyl-CoA. The cofactor adenosylcobalamin (AdoCbl) serves as a radical reservoir that generates the S -deoxyadenosine radical (dAdo ) via homolysis of the Co—C5 bond [67], The mechanisms by which the enzyme stabilizes the homolysis products and achieve an observed 1012-fold rate acceleration are yet not fully understood. Co—C bond homolysis is directly kineti-cally coupled to the proceeding hydrogen atom transfer step and the products of the bond homolysis step have therefore not been experimentally characterized. 

In mammals and in the majority of bacteria, cobalamin regulates DNA synthesis indirectly through its effect on a step in folate metabolism, catalyzing the synthesis of methionine from homocysteine and 5-methyltetrahydrofolate via two methyl transfer reactions. This cytoplasmic reaction is catalyzed by methionine synthase (5-methyltetrahydrofolate-homocysteine methyl-transferase), which requires methyl cobalamin (MeCbl) (253), one of the two known coenzyme forms of the complex, as its cofactor. 5 -Deoxyadenosyl cobalamin (AdoCbl) (254), the other coenzyme form of cobalamin, occurs within mitochondria. This compound is a cofactor for the enzyme methylmalonyl-CoA mutase, which is responsible for the conversion of T-methylmalonyl CoA to succinyl CoA. This reaction is involved in the metabolism of odd chain fatty acids via propionic acid, as well as amino acids isoleucine, methionine, threonine, and valine. 

Carboxylation of propionyl-CoA is accomplished by propionyl-CoA carboxylase (biotin, which is the carboxyl group carrier, serves as a coenzyme for this enzyme) the presence of ATP is also required. The methylmalonyl-CoA formed is converted by methylmalonyl-CoA mutase (whose coenzyme, deoxyadenosylcobalamin, is a derivative of vitamin B]2) to succinyl-CoA the latter enters the Krebs cycle. 

Makes propionyl-CoA, which is metabolized by propionyl-CoA carboxylase (biotin) and methylmalonyl-CoA mutase (B12) to give succinyl-CoA. 

Odd-chain fatty acids are an exception. While they are relatively rare in the diet, odd-chain-length fatty acids end up at propionyl-CoA (C3). Propionyl-CoA is carboxylated by propionyl-CoA carboxylase to give methylmalonyl-CoA. Methylmalonyl-CoA is rearranged to succinyl-CoA by the enzyme methylmalonyl-CoA mutase, a vitamin-B12-requiring enzyme. 

A recent study has indicated that the skeletal rearrangement step in the B12-catalysed isomerization of methylmalonyl-CoA to succinyl-CoA occurs not by a radical pathway but by an anionic or organocobalt pathway. A computational study of the isomerization of allyl alcohol into homoallyl alcohol by lithium amide has pointed to a process proceeding via a transition state in which the proton is half transferred between carbon and nitrogen in a hetero-dimer. l,l-Dilithio-2,2-diphenylethene... 

In rearrangements (isomerizations, not shown), groups are shifted within one and the same molecule. Examples of this in biochemistry include the isomerization of sugar phosphates (see p.36) and of methylmalonyl-CoA to succinyl CoA (see p. 166). 

Adenosylcobalamin (coenzyme 812) carries a covalently bound adenosyl residue at the metal atom. This is a coenzyme of various isomerases, which catalyze rearrangements following a radical mechanism. The radical arises here through homolytic cleavage of the bond between the metal and the adenosyl group. The most important reaction of this type in animal metabolism is the rearrangement of methylmalonyl-CoAto form succinyl-CoA, which completes the breakdown of odd-numbered fatty acids and of the branched amino acids valine and isoleucine (see pp. 166 and 414). 

Fatty acids with an odd number of C atoms are treated in the same way as normal fatty acids—i. e., they are taken up by the cell with ATP-dependent activation to acyl CoA and are transported into the mitochondria with the help of the carnitine shuttle and broken down there by p-oxidation (see p. 164). In the last step, propionyl CoA arises instead of acetyl CoA. This is first carboxylated by propionyl CoA carboxylase into fSj-methylmalonyl CoA [3], which—after isomerization into the (i ) enantiomer (not shown see p. 411)—is isomerized into succinyl CoA [4]. 

Oxoacyl CoA Acetyl CoA Propionyl CoA (S)-Methylmalonyl CoA (R)-Methylmalonyl CoA S) Succinyl CoA... 

Propionyl CoA is further metabolized in a three-step process to succinyl CoA, in which methylmalonyl CoA is an intermediate. 

Vitamin Bjj (8.50, cobalamin) is an extremely complex molecule consisting of a corrin ring system similar to heme. The central metal atom is cobalt, coordinated with a ribofuranosyl-dimethylbenzimidazole. Vitamin Bjj occurs in liver, but is also produced by many bacteria and is therefore obtained commercially by fermentation. The vitamin is a catalyst for the rearrangement of methylmalonyl-CoA to the succinyl derivative in the degradation of some amino acids and the oxidation of fatty acids with an odd number of carbon atoms. It is also necessary for the methylation of homocysteine to methionine. 

The other reaction that requires vitamin B12 is isomerization of methylmalonyl-CoA to succinyl-CoA by the enzyme methylmalonyl-CoA mutase (Figure 33-2B). In vitamin B12 deficiency, this conversion cannot take place and the... 

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