Mechanism amino acid transamination

Figure 29.15 Mechanism of steps 2-4 of amino acid transamination, the conversion of a PLP-amino acid imine to PMP and an a-keto acid.

Most amino acids lose their nitrogen atom by a transamination reaction in which the -NH2 group of the amino acid changes places with the keto group of ct-ketoglutarate. The products are a new a-keto acid plus glutamate. The overall process occurs in two parts, is catalyzed by aminotransferase enzymes, and involves participation of the coenzyme pyridoxal phosphate (PLP), a derivative of pyridoxine (vitamin UJ. Different aminotransferases differ in their specificity for amino acids, but the mechanism remains the same. 

The mechanism of the first part of transamination is shown in Figure 29.14. The process begins with reaction between the a-amino acid and pyridoxal phosphate, which is covalently bonded to the aminotransferase by an iminc linkage between the side-chain -NTI2 group of a lysine residue and the PLP aldehyde group. Deprotonation/reprotonation of the PLP-amino acid imine in steps 2 and 3 effects tautomerization of the imine C=N bond, and hydrolysis of the tautomerized imine in step 4 gives an -keto acid plus pyridoxamine... 

Figure 29 14 MECHANISM Mechanism of the enzyme-catalyzed, PLP-dependent transamination of an a-amino acid to give an a-keto acid. Individual steps are explained in the text.

Glutamate is a commonly occurring amino acid that acts as an excitatory transmitter in CNS. The molecule may be synthesized within the nerve ending either by transamination from 2-oxoglutarate (described in Section 6.3.1.1) or by deamination of glutamine (see Section 8.2.2). However, in common with other synaptic signals, there exists an efficient uptake mechanism in the axon to recycle glutamate that has been released. 

The Schiff base can undergo a variety of reactions in addition to transamination, shown in Fig. 6.4 for example, racemization of the amino acid via the a-deprotonated intermediate. Many of these reactions are catalyzed by metal ions and each has its equivalent nonmetallic enzyme reaction, each enzyme containing pyridoxal phosphate as a coenzyme. Many ideas of the mechanism of the action of these enzymes are based on the behavior of the model metal complexes. 

During the degradation of most amino acids, the a-amino group is initially removed by transamination or deamination. Various mechanisms are available for this, and these are discussed in greater detail in B. The carbon skeletons that are left over after deamination undergo further degradation in various ways. 

In the branched-chain amino acids (Val, Leu, He) and also tyrosine and ornithine, degradation starts with a transamination. For alanine and aspartate, this is actually the only degradation step. The mechanism of transamination is discussed in detail on p. 178. 

Pyridoxal phosphate is the coenzyme for the enzymic processes of transamination, racemization and decarboxylation of amino-acids, and for several other processes, such as the dehydration of serine and the synthesis of tryptophan that involve amino-acids (Braunstein, 1960). Pyridoxal itself is one of the three active forms of vitamin B6 (Rosenberg, 1945), and its biochemistry was established by 1939, in considerable part by the work of A. E. Braunstein and coworkers in Moscow (Braunstein and Kritzmann, 1947a,b,c Konikova et al 1947). Further, the requirement for the coenzyme by many of the enzymes of amino-acid metabolism had been confirmed by 1945. In addition, at that time, E. E. Snell demonstrated a model reaction (1) for transamination between pyridoxal [1] and glutamic acid, work which certainly carried with it the implication of mechanism (Snell, 1945). 

This mechanism is supported by the fact that every 3-oxoalkylarsonic acid studied also eliminated arsenite. First, 3-hyroxypropylarsonic acid proved to be a substrate for alcohol dehydrogenase from yeast, and similarly eliminated arsenite. Further, the oxidation by periodate of the HO—CH2—CHOH—CH2—CH2—As03H2, expected to produce 0=CH—CH2—CH2—As03H2 (another 3-oxoalkylarsonic acid), also yielded arsenite, and conditions that normally transaminate amino acids, when applied to the glutamate analogue HOOC—CH(—NH2)—... 

Pyrazines are formed from transamination reactions, in addition to carbon dioxide and formaldehyde. A requirement is that the carbonyl compound contains a dione and the amino group is alpha to the carboxyl group (16). If the hydrogen on the ct-carbon oI the amino acid is substituted, a ketone is produced. Newell (17) initially proposed a pyrazine formation mechanism between sugar and amino acid precursors. (See Figure 3). The Schiff base cation is formed by addition of the amino acid to the anomeric portion of the aldo-hexose, with subsequent losses of vater and a hydroxyl ion. Decarboxylation forms an imine which can hydrolyze to an aldehyde and a dienamine. Enolization yields a ketoamine, vhich dissociates to amino acetone and glyceraldehyde. 2,5-Dimethylpyrazine is formed by the condensation of the tvo molecules of amino acetone. 

Know in detail how amino acids can lose their nitrogen by transamination and deamination reactions and combination of the two know in detail how nitrogen is disposed of in the organism the alanine, glutamine, and urea cycles be able to recite the names of all enzymes, cofactors, and intermediates, and be familiar with their regulatory mechanisms be able to recognize and draw structures of all intermediates involved in these reactions. 

In addition to being incorporated into tissue proteins, amino acids, after losing their nitrogen atoms by deamination and/or transamination, may be catabolized to yield energy or to form glucose. Conversely, the nonessential amino acids may be synthesized from carbohydrate metabolism intermediates and ammonia or from essential amino acids. This section is devoted to the mechanisms of such metabolic processes and their interrelationships with carbohydrate and lipid metabolic pathways. 

Central effects on blood pressure regulation as a result of decreased synthesis of brain GABA and serotonin (5-hydroxytryptamine). Glutamate decarboxylase activity in the nervous system is especially sensitive to vitamin Bg depletion, possibly as a result of mechanism-dependent inactivation by transamination. Although there is no evidence that aromatic amino acid decarboxylase activity is reduced in vitamin Bg deficiency, there is reduced formation of serotonin in the central nervous system. 

Elongation of amino acid side chains prior to glucosinolate biosynthesis has been studied in several plants. The mechanisms involved are believed to be similar to the formation of leucine from valine and acetate (Fig. 3.13). Through transamination, the amino acid is converted to the corresponding... 

These reactions are carried out by pyridoxalphosphate-dependent transaminases. Transamination reactions participate in the synthesis of most amino acids. We shall review the transaminase mechanism (Section 23.3.1) as it applies to amino acid biosynthesis (see Figure 23.10). 

The molecule is a chiral analogue of pyridoxamine and transamination occurs chemically by a mechanism similar to the biological one described in the chapter (pp. 1384-6). The zinc holds the molecule in a fixed conformation during reaction. The key step is the protonation of the enamine as that produces the new chiral centre. If the chain is across the top of the ring, protonation occurs preferentially from underneath. Hydrolysis gives the new amino acid (Phe) and the pyridoxal analogue, which can be recycled by reductive amination via the oxime. 

---