Intra-ligand

T 1 1 Descriptors of ligands and biopolymers can be used to derive intra-ligand, intra-biopolymer and ligand-biopolymer... 

Conformational Adjustments The conformations of protein and ligand in the free state may differ from those in the complex. The conformation in the complex may be different from the most stable conformation in solution, and/or a broader range of conformations may be sampled in solution than in the complex. In the former case, the required adjustment raises the energy, in the latter it lowers the entropy in either case this effect favors the dissociated state (although exceptional instances in which the flexibility increases as a result of complex formation seem possible). With current models based on two-body potentials (but not with force fields based on polarizable atoms, currently under development), separate intra-molecular energies of protein and ligand in the complex are, in fact, definable. However, it is impossible to assign separate entropies to the two parts of the complex. 

The chiral information of stereogenic centers in the allyl moiety of the precursor is destroyed on deprotonation. While an i/3-bound ion pair with a planar carbon frame is a chiral compound, usually rapid racemization takes place by intra- or intermolecular migration of the cation from one face to the opposite one. The sole exceptions known at present are secondary 2-alkenyl carbamates with X = dialkylaminocarbonyloxy21, in which the cation is tied by the chelating ligand, see Section 1.3.3.3.1.2. 

Gresh N, Cisneros GA, Darden TA, Piquemal J-P (2007) Anisotropic, polarizable molecular mechanics studies of inter-, intra-molecular interactions, and ligand-macromolecule complexes. A bottom-up strategy. J Chem Theory Comput 3 1960... 

With these features in mind, we envisioned a new family of macrocyclic ligands for olefin polymerization catalysis (Fig. 9) [131, 132], We utilized macrocycles as the ligand framework and installed the catalytic metal center in the core of the macrocycles. Appropriate intra-annular binding sites are introduced into cyclophane framework that not only match the coordination geometry of a chosen metal but also provide the appropriate electronic donation to metal center. The cyclophane framework would provide a microenvironment to shield the catalytic center from all angles, but leaving two cis coordination sites open in the front one for monomer coordination and the other for the growing polymer chain. This could potentially protect the catalytic center and prevent it from decomposition or vulnerable side reactions. 

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