Isopentenyl pyrophosphate biosynthesis

Biological isoprene unit. See Isopentenyl pyrophosphate Biosynthesis... 

In the juvenile hormones I and II propionate is incorporated in contrast to the juvenile hormone III. It is, therefore, expected that with propionyl Co A (D 4) as the starter molecule, homoisopentenyl pyrophosphate is built in a pathway similar to that of isopentenyl pyrophosphate biosynthesis (Fig. 142). The different juvenile hormones may derive from homoisopentenyl pyrophosphate and isopentenyl pyrophosphate in the relations shown in Table 40. 

Fig. 2. Isopentenyl pyrophosphate biosynthesis and compartmen-tation in the plant cell. For explanation see text.

D-Mevalonic acid is the fundamental intermediate in the biosynthesis of the terpenoids and steroids, together classed as poly-isoprenoids. The biogenetic isoprene unit is isopentenyl pyrophosphate which arises by enzymic decarboxylation-dehydration of mevalonic acid pyrophosphate. D-Mevalonic acid is almost quantitatively incorporated into cholesterol synthesized by rat liver homogenates. 

The introduction to Section 26 8 pointed out that mevalonic acid is the biosynthetic pre cursor of isopentenyl pyrophosphate The early steps m the biosynthesis of mevalonate from three molecules of acetic acid are analogous to those m fatty acid biosynthesis (Sec tion 26 3) except that they do not involve acyl earner protein Thus the reaction of acetyl coenzyme A with malonyl coenzyme A yields a molecule of acetoacetyl coenzyme A... 

Section 26 10 The biosynthesis of isopentenyl pyrophosphate begins with acetate and proceeds by way of mevalonic acid... 

Shelton, D.A., Leach, D.N., and Henry, R.J., Isopentenyl pyrophosphate isomerases from Melaleuca altemifolia (Cheel) and their role in isoprenoid biosynthesis, J. Hort. 

ARIGONI, D., EISENREICH, W, LATZEL, C., SAGNER, S., RADYKEWICZ, T, ZENK, M.H., BACHER, A., Dimethylallyl pyrophosphate is not the committed precursor of isopentenyl pyrophosphate during terpenoid biosynthesis from 1-deoxyxylulose in higher plants, Proc. Natl. Acad. Sci. USA, 1999, 96,1309-1314. 

Earlier work by Nancy Bucher showed an ATP requirement for cholesterol biosynthesis. The involvement of phosphorylated intermediates was established by Comforth, Popjak, and their associates in the early 1960s with the discovery of kinases which successively phosphorylated MVA to MVA-P and MVA-P to MVA-PP. MVA-PP was decar-boxylated and dehydrated to give the biological C5 isoprene unit, isopentenyl pyrophosphate. This undergoes successive head-to-tail condensations to give the linear 15C terpenoid, famesyl pyrophosphate. 

Prenylation, the key step in terpene biosynthesis, is catalyzed by prenyltransferases. These enzymes are responsible for the condensation of isopentenyl pyrophosphate (IPP) with an allyl pyrophosphate, thus yielding isoprenoids. Numerous studies have been performed with fluorinated substrates in order to determine the mechanism of the reactions that involve these enzymes prenyltransferases, farnesyl diphosphate synthase (FDPSase), famesyltransferase (PFTase), and IPP isomerase. These studies are based on the potential ability of fluorine atoms to destabilize cationic intermediates, and then slow down S l type processes in these reactions. 

In addition to its role as an intermediate in cholesterol biosynthesis, isopentenyl pyrophosphate is the activated precursor of a huge array of biomolecules with diverse biological roles (Fig. 21-48). They include vitamins A, E, and K plant pigments such as carotene and the phytol chain of chlorophyll natural rubber many essential oils (such as the fragrant principles of lemon oil, eucalyptus, and musk) insect juvenile hormone, which controls metamorphosis dolichols, which serve as lipid-soluble carriers in complex polysaccharide synthesis and ubiquinone and plastoquinone, electron carriers in mitochondria and chloroplasts. Collectively, these molecules are called isoprenoids. More than... 

Elimination usually involves loss of a proton together with a nucleophilic group such as -OH, -NH3+, phosphate, or pyrophosphate. However, as in Eq. 13-18, step c, electrophilic groups such as -COO-can replace the proton. Another example is the conversion of mevalonic acid-5-pyrophosphate to isopentenyl pyrophosphate (Eq. 13-19) This is a key reaction in the biosynthesis of isoprenoid compounds such as cholesterol and vitamin A (Chapter 22). The phosphate ester formed in step a is a probable intermediate and the reaction probably involves a carbo-cationic intermediate generated by the loss of phosphate prior to the decarboxylation. 

The biosynthesis of steroids begins with the conversion of three molecules of acetyl-CoA into mevalon-ate, the decarboxylation of mevalonate, and its conversion to isopentenyl pyrophosphate. Six molecules of isopentenyl pyrophosphate are polymerized into squalene, which is cyclized to yield lanosterol. Lanos-terol is converted to cholesterol, which is the precursor of bile acids and steroid hormones. 

A quantum chemical investigation of the biosynthesis of farnesyl pyrophosphate through the condensation of isopentenyl pyrophosphate and dimethylallyl pyrophosphate suggests that the mechanism is concerted, although the transition state has carbocationic character.164 Quantum chemical calculations were performed on the cyclization of the farnesyl cation to the sesquiterpene pentalenene.165 Two distinct pathways with similar activation barriers were identified, each differing from previous proposed mechanisms, and each involving unusual carbocationic intermediates. Mechanisms previously proposed for enzyme-catalysed formation of the sesquiterpene trichodiene involve carbocation intermediates with a 1,4-hydride transfer as the key step, e.g. (89) -> (90) - (91).166 Quantum chemical calculations, however, show a... 

The biosynthesis of monoterpenoids and camphor has been described by several authors (108-llU). Ruzicka (115,116) proposed a unified biogenetic scheme for terpenes. The biosynthetic building blocks for these terpenes are iso-prene units. The biosynthetically active isoprene units are isopentenyl pyrophosphate [l] and dimethyl allyl pyrophosphate [2] the compounds that are derived from acetate via mevalonic acid (Scheme V). Geranyl pyrophosphate [3] is the C-10 precursor for the terpenes (117). Banthorpe and Baxendale (ll8) confirmed the biosynthetic pathway of (iamphor via acetate mevalonate by conducting degradation study of camphor, biosynthesized from l c labelled mevalonic acid. The biosynthesis of camphor is summarised in Scheme VI. 

The first stage in the synthesis of cholesterol is the formation of isopentenyl pyrophosphate Fig. 1). Acetyl CoA and acetoacetyl CoA combine to form 3-hydroxy-3-methylglutaryl CoA (HMG CoA). This process takes place in the liver, where the HMG CoA in the mitochondria is used to form ketone bodies during starvation (see Topic K2), whereas that in the cytosol is used to synthesize cholesterol in the fed state (under the influence of cholesterol). HMG CoA is then reduced to mevalonate by HMG CoA reductase Fig. 1). This is the committed step in cholesterol biosynthesis and is a key control point. Mevalonate is converted into 3-isopentenyl pyrophosphate by three consecutive reactions each involving ATP, with C02 being released in the last reaction Fig. 1). 

Monoterpenes, with 10 carbons, can be viewed as resulting from the combination of two isoprene units. Isopentenyl pyrophosphate is the source of these isoprene units in biosynthesis. Dimethylallyl pyrophosphate, which is isomeric with isopentenyl pyrophosphate and is produced from it by the enzyme isopentenyl pyrophosphate iso-merase, is also an important intermediate. 

The pathway for the biosynthesis of isopentenyl pyrophosphate is outlined in Figure 28.1. The starting material for this process is represented as acetyl CoA, which... 

So is isopentenyl pyrophosphate the C5 intermediate at last Well, yes and no. There are actually two closely related C5 intermediates, each of which has a specific and appropriate role in terpene biosynthesis. Isopentenyl pyrophosphate is in equilibrium with dimethylallyl pyrophosphate by a simple allylic proton transfer. 

Several papers report new findings on ubiquinone biosynthesis. A mitochondrial membrane-rich preparation from baker s yeast can convert 4-hydroxybenzoate and isopentenyl pyrophosphate into the ubiquinone precursor 3-all-trans-hexaprenyl-4-hydroxybenzoate (234). Details of the cell-free system are presented. With preformed polyprenyl pyrophosphates, the system catalysed the polyprenylation of several aromatic compounds, e.g. methyl 4-hydroxybenzoate, 4-hydroxybenzaldehyde, 4-hydroxybenzyl alcohol, and 4-hydroxycinnamate. No evidence was obtained for the involvement of 4-hydr-oxybenzoyl-CoA or 4-hydroxybenzoyl-S-protein in the reaction. With shorter-chain prenyl pyrophosphates a shorter prenyl side-chain was introduced, e.g. geranyl and farnesyl pyrophosphates gave products with a 3-diprenyl and 3-triprenyl side-chain respectively. A crude enzyme preparation from E. coli... 

The overall strategy of terpene biosynthesis from dimethylallyl pyrophosphate and isopentenyl pyrophosphate is summarized in Figure 29.9. 

Qureshi N, Porter JW. Conversion of acetyl-coenzyme A to isopentenyl pyrophosphate. In Biosynthesis of isoprenoid Compounds. J. W. Porter and S. L. Spurgeon, eds. 1981. John Wiley, New York. pp. 47-94. 

Unexpected results have come to light bearing on monoterpenoid biosynthesis (Chapter 1). Banthorpe s group have shown that in the formation of the thujane and camphor skeletons, activity from labelled mevalonic acid can appear predominantly in the C5 unit supposedly derived from isopentenyl pyrophosphate and only to a minor extent in the dimethylallyl pyrophosphate-derived portion. Banthorpe has also presented evidence for a chrysanthemyl intermediate, analogous to presqualene alcohol, in the biosynthesis of artemesia ketone. 

---