Iron biomolecules

A.K. Powell (1993) Models for iron biomolecules in Chemistry of Iron, ed. J. Silver, Blackie, London, p. 244. 

The first indication of a possible connection between geological processes occurring at the boundaries between tectonic plates of the mid-oceanic ridges and the biogenesis problem was provided by J. B. Corliss (1981). He considered the hydrothermal conditions to be ideal reactors for abiotic synthesis these ideal conditions were the water temperature gradients, the pH, and the concentrations of solutes in the hot springs. The presence of certain minerals which could act as catalysts, such as montmorillonite, clay minerals, iron oxide, sulphides etc., was also very important. The initial model presented for the hydrothermal synthesis of biomolecules (Corliss, 1981) was modified, particularly by Russell (1989) and Wachtershauser (see Sect. 7.3). 

The thioester world postulated by de Duve should in fact be called the sulphur-iron world , since iron ions are essential for the redox processes occurring in such a thioester world, de Duve (1991, 1996) asks a question which is vital for the whole of prebiotic chemistry where did the redox equivalents necessary for the construction of biomolecules on the primeval Earth come from This question becomes largely irrelevant if the strongly reducing atmosphere postulated by Miller/Urey and... 

Transition metals such as iron can catalyze oxidation reactions in aqueous solution, which are known to cause modification of amino acid side chains and damage to polypeptide backbones (see Chapter 1, Section 1.1 Halliwell and Gutteridge, 1984 Kim et al., 1985 Tabor and Richardson, 1987). These reactions can oxidize thiols, create aldehydes and other carbonyls on certain amino acids, and even cleave peptide bonds. The purposeful use of metal-catalyzed oxidation in the study of protein interactions has been done to map interaction surfaces or identify which regions of biomolecules are in contact during specific affinity binding events. 

Simultaneous generation of nitric oxide and superoxide by NO synthases results in the formation of peroxynitrite. As the reaction between these free radicals proceeds with a diffusion-controlled rate (Chapter 21), it is surprising that it is possible to detect experimentally both superoxide and NO during NO synthase catalysis. However, Pou et al. [147] pointed out that the reason is the fact that superoxide and nitric oxide are generated consecutively at the same heme iron site. Therefore, after superoxide production NO synthase must cycle twice before NO production. Correspondingly, there is enough time for superoxide to diffuse from the enzyme and react with other biomolecules. 

Polysaccharides are used as structural units and as stored energy sources. Proteins are used to construct muscle and enzymes that also contain metals such as zinc, manganese, and iron. There are many other important biomolecules present at lower concentrations such as DNA and RNA, which are also released into the soil solution. All can be the source of smaller molecules in the soil solution. 

One large class of non-heme iron-containing biomolecules involves proteins and enzymes containing iron-sulfur clusters. Iron-sulfur clusters are described in Sections 1.7 (Bioorganometallic Chemistry) and 1.8 (Electron Transfer) as well as in Section 3.6 (Mossbauer Spectroscopy). See especially Table 3.2 and the descriptive examples discussed in Section 3.6.4. Iron-sulfur proteins include rubredoxins, ferrodoxins, and the enzymes aconitase and nitrogenase. The nitrogenase enzyme was the subject of Chapter 6 in the hrst edition of this text—see especially Section 6.3 for a discussion of iron-sulfur clusters. In this... 

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