Interacting sites, location

Multicomponent systems that present polyamorphism have also been reported in computer simulation studies. For example, in Ref. [35], it is found that silica has a LLCP at very low temperature. Silica is also a tetrahedral liquid and it shares many of the thermodynamic properties observed in water. In Ref. [35], two silica models were considered. In both models, the interactions among O and Si atoms are isotropic, due to single point charges and short-range interacting sites located on each atom. Both models considered in Ref. [35] are characterized by a LLCP at very low temperature and coexistence between two liquids is observed in out of equilibrium simulations close to one of the spinodal lines (see Fig. 2b). The location of the LLCP was estimated to be below the glass transition in real silica and hence, unaccessible in experiments. We note that polyamorphism in the glass state is indeed observed in compression experiments on amorphous silica [14], and is qualitatively reproduced in computer simulations [89]. Other examples of multicomponent systems that show LLPT in simulations are presented in Refs [65,90]. In these cases, a substance that already shows polymorphism is mixed with a second component. 

FIGURE 22.20 The molecular architecture of PSI. PsaA and PsaB constitute the reaction center dimer, an integral membrane complex P700 is located at the lumenal side of this dimer. PsaC, which bears Fe-S centers and Fb, and PsaD, the interaction site for ferre-doxin, are on the stromal side of the thylakoid membrane. PsaF, which provides the plasto-cyaiiin interaction site, is on the lumenal side. (Adapted from Golbeck, J. H., 1992. Amiual Review of Plant Physiology and. Plant Molecular Biology 43 293-324.)... 

An active matrix provides the primary cracking sites. The acid sites located in the catalyst matrix are not as selective as the zeolite sites, but are able to crack larger molecules that are hindered from entering the small zeolite pores. The active matrix precracks heavy feed molecules for further cracking at the internal zeolite sites. The result is a synergistic interaction between matrix and zeolite, in which the activity attained by their combined effects can be greater than the sum of their individual effects [2J. 

A modification of the united-atom approach, called the anisotropic united-atom (AUA) model was the focus of extensive work by Karabomi et al. [362-365]. As in the other models of hydrocarbon chains described so far, the AUA approach to monolayers was preceded by work on alkanes [367]. hi the AUA model the interaction site is located at the geometrical mean of the valence electrons of the atoms it represents, while the pseudoatom itself is located at the carbon atom position. The movement of each interaction center depends on the conformation of the molecule as a whole. 

Active sites located on crystal surfaces different from the basal (001) ones were also proposed by Allegra14 for which the Ti atom at the surface of the cut would be bonded to four Cl atoms only (bridged to further metal atoms) (Figure 1.14). In this case both octahedral sites of coordination for the monomer and growing chain (indicated by arrows in Figure 1.14) are equivalent because the surface atoms with relevant nonbonded interactions at the catalytic site are locally related by a twofold axis (dashed line in Figure 1.14). It is worth noting that this model site presents a local C2 symmetry as the isospecific metallocenes of the previous section. 

Supermolecules built from small molecules mainly involve intermolecular interactions. On the other hand, with macromolecules the supramolecular association may be either intermolecular, occurring between the large molecules, or intramolecular involving recognition sites located either in the main chain or in side-chain appendages, thus leading to chain folding and structuration of the macromolecular... 

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