Heterocyclic Hydrogen bonding

Two problems may be encountered here depending upon whether N-containing heterocycles (which may react as protonated and hydrogen-bonded species) or other heterocycles (hydrogen-bonding only) are considered. 

Each compound, 1, 2, was combined in a 1 2 ligand-acid ratio with 30 different carboxylic acids. All products were characterized by infrared spectroscopy to determine if a co-crystal had formed. The presence of two broad bands at ca. 2,500 cm and 1,900 cm characteristic of an O-H N (acid N-heterocycle) hydrogen-bond interaction, was taken as evidence for co-crystal formation since these bands would not appear in any of the individual compounds. 

In general, the solubility of heterocyclic compounds in water (Table 33) is enhanced by the possibility of hydrogen bonding. Pyridine-like nitrogen atoms facilitate this (compare benzene and pyridine). In the same way, oxazole is miscible with water, and isoxazole is very soluble, more so than furan. 

Other solvents can be divided into several classes. In hydrogen bond-breaking solvents (dipolar aprotics), the simple amino, hydroxy and mercapto heterocycles all dissolve. In the hydrophobic solvents, hydrogen bonding substituents greatly decrease the solubility. Ethanol and other alcohols take up a position intermediate between water and the hydro-phobic solvents (63PMH 1)177). 

The physical properties of the pyridopyrimidines closely resemble those of their nearest A-heteroeyclie neighbors the quinazolines and the pteridines. Thus, in common with the pteridines, the presence of groups capable of hydrogen-bonding markedly raises the melting point and lowers the solubility. - The acid dissociation constants (pif a values) and ultraviolet absorption spectra of all four parent pyridopyrimidines have been determined by Armarego in a comprehensive study of covalent hydration in these heterocyclic systems. The importance of these techniques in the study of covalent hydration, and... 

Spectroscopic evidence indicates that protonation of 2-fluoro-and 2-chloro-quinoline is not appreciable in O.OlJf aqueous hydrochloric acid. Protonation becomes evident in more strongly acidic solution in the case of the chloro compound without any accompanying decomposition, but the fluoro compound hydrolyzes to carbostyril under the latter conditions. The hydrolysis is acid-catalyzed, but it is doubtful whether protonation on the heterocyclic nitrogen is responsible, owing to its low basicity (presumably below that for the chloro compound). An alternative explanation in this case would be hydrogen bond formation with fluorine, Ar—F. .. H-O+H2. 

Solvent effects also depend on the ground-state structure of the substrate and on the transition-state structure, as is shown below. Here let us merely note that A-heterocyclic compounds tend to form a hydrogen bond with hydroxylic solvents even in the ground state. Hydrogen-bond formation in this case is a change in the direction of quaternization of the aza group, as demonstrated by spectral evidence. Therefore, it is undoubtedly a rate-enhancing interaction. 

The mechanism of recognition of most supramolecular entities (such as abiotic receptors) is the formation of several hydrogen bonds. Since heterocyclic tautomers possess both strong HBA and HBD properties (see Sections III,G, V,D,2, and VI,G), they are often used for this purpose. For instance, the hydrogen bond network formed by 5,5 -linked bis(2-pyridones) has been used by Dickert to obtain sensors (96BBG1312). 

The role of hydrogen bonding and hydrophobic interactions in medicinal effect of heterocycles 99AG(E)736. 

Noncovalent synthesis of organic nanostmctures, hydrogen-bonded ensembles including heterocyclic analogs of calix[4]arenes 98PAC1459. 

Molecules of DNA consist of two complementary polynucleotide strands held together by hydrogen bonds between heterocyclic bases on the different strands and coiled into a double helix. Adenine and thymine form hydrogen bonds to each other, as do cytosine and guanine. 

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