Geranyl diphosphate

Limonene, a fragrant hydrocarbon found in lemons and oranges, is bio-synthesized from geranyl diphosphate by the following pathway. Add curvec arrows to show the mechanism of each step. Which step involves an alkene electrophilic addition (The ion 0P2064- is the diphosphate ion, and "Base is an unspecified base in the enzyme that catalyzes the reaction.)... 

Following this initial SN1 reaction, loss of the pro-R hydrogen gives geranyl diphosphate, itself an allylic diphosphate that dissociates a second time. Reaction of the geranyl carbocation with water in a second S>jl reaction, followed by loss of a proton, then yields geraniol. 

The conversion of isopentenyl diphosphate (IPP) to terpenoids begins with its isomerization to dimethylallyl diphosphate, abbreviated DMAPP and formerly called dimethylallyl pyrophosphate. These two C5 building blocks then combine to give the C10 unit geranyl diphosphate (GPP). The corresponding alcohol, geraniol, is itself a fragrant terpenoid that occurs in rose oil. 

Figure 27.9 Mechanism of the coupling reaction of dimethylallyl diphosphate (DMAPP) and isopentenyl diphosphate (IPP), to give geranyl diphosphate (GPP).

Figure 27.10 Mechanism of the formation of the monoterpene limonene from geranyl diphosphate.

Propose a mechanistic pathway for the biosynthesis of cr-terpineol from geranyl diphosphate. 

Without proposing an entire biosynthetic pathway, draw the appropriate precursor, either geranyl diphosphate or farnesvl diphosphate, in a conformation that shows a likeness to each of the following terpenoids ... 

Gem, see Geminal, 705 Geminal (gem), 705 Genome, size of in humans. 1107 Gentamicin, structure of, 1002 Geraniol, biosynthesis of, 382 Geranyl diphosphate, biosynthesis of, 1077-1078... 

IPP = isopentenyl diphosphate GPP = geranyl diphosphate FPP = farnesyl diphosphate ... 

The late cannabinoid pathway starts with the alkylation of ohvetolic acid (3.2 in Fig. 4) as polyketide by geranyl diphosphate (3.1) as the terpenoid unit. Terpenoids can be found in all organisms, and in plants two terpenoid pathways are known, the so called mevalonate (MEV) and non-mevalonate (DXP) pathway as described by Eisenrich, lichtenthaler and Rohdich [23,24,29,30]. The mevalonate pathway is located in the cytoplasm of the plant cells [30], whereas the DXP pathway as major pathway is located in the plastids of the plant cells [29] and delivers geranyl diphosphate as one important precursor in the biosynthesis. 

Fig. 4 Proposed biosynthetic pathways for the production of ipsdienol in I. pini and frontalin in D. spp. Both pathways utilize an isoprenoid biosynthetic pathway to produce geranyl diphosphate...

Evidence for de novo synthesis of pheromone components was obtained by showing that labeled acetate and mevalonate were incorporated into ipsdienol by male Ips pini [103,104]. Similarly, labeled acetate and other labeled intermediates were shown to be incorporated into frontalin in a number of Dendroctonus species [105]. Possible precursors to frontalin include 6-methyl-6-hep-ten-2-one, which was incorporated into frontalin by D. ruffipennis [106]. The precursor 6-methyl-6-hepten-2-one also was shown to be converted to bre-vicomin in the bark beetle, Dendroctonus ponderosae [107]. In addition, the expression patterns of HMG-CoA reductase and HMG-CoA synthase are tightly correlated with frontalin production in Dendroctonus jeffreyi [108, 109]. A geranyl diphosphate synthase cDNA from I. pini was also isolated, functionally expressed, and modeled [110]. These data indicate that the de novo isoprenoid biosynthetic pathway is present in bark beetles. A variety of other monoterpene alcohols such as myrcenol, pityol, and sulcitol are probably synthesized through similar pathways [111]... 

Figure 9.4 Monoterpene biosynthesis in peppermint oil gland secretory cells. The enzymes involved in this pathway are (1) 1-deoxy-D-xylulose 5-phosphate synthase, (2) 2-C-methyl-D-erythritol 4-phosphate reductoisomerase, (3) 2-C-methyl-D-erythritol 4-phosphate cytidyltransferase, (4) 4-(cytidine 5 -diphospho)-2-C-methyl-D-erythritol kinase, (5) 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, (6) isopentenyl diphosphate isomerase, (7) geranyl diphosphate synthase, (8)...

BURKE C.C., WILDUNG, M.R., CROTEAU, R., Geranyl diphosphate synthase cloning, expression, and characterizatin of this prenyltransferase as a heterodimer, Proc. Natl. Acad. Sci. USA, 1999, 96,13062-13067. 

Turner GW, Croteau R (2004) Organization of monoterpene biosynthesis in Mentha. Immunocytochemical localizations of geranyl diphosphate synthase, Umonene-6-hydroxylase, isopiperitenol dehydrogenase, and pulegone reductase. Plant Physiol 136 4215 227... 

Geranyl diphosphate and farnesyl diphosphate are analogues of dimethylallyl diphosphate that contain two and three C5 subunits respectively they can undergo exactly the same SnI reactions as does dimethylallyl diphosphate. In all cases, a carbocation mechanism is favoured by the resonance stabilization of the allylic carbocation. Dimethylallyl diphosphate, geranyl diphosphate, and farnesyl diphosphate are precursors for natural terpenoids and steroids. 

The possibility of nucleophilic attack on different carbons in the resonance-stabilized carbocation facilitates another modification exploited by nature during terpenoid metabolism. This is a change in double-bond stereochemistry in the allylic system. The interconversions of geranyl diphosphate, linalyl diphosphate, and neryl diphosphate provide neat but satisfying examples of the chemistry of simple allylic carbocations. 

An exactly analogous process can then occur, in which geranyl diphosphate provides the allylic cation, and a further molecule of isopentenyl diphosphate adds on, giving farnesyl diphosphate this can subsequently yield geranylgeranyl diphosphate. 

The compounds geranyl diphosphate, farnesyl diphosphate, and geranylgeranyl diphosphate are biochemical precursors of monoterpenes, sesquiterpenes, and diterpenes respectively, and virtually all subsequent modifications of these precursors involve initial formation of an allylic cation through loss of diphosphate as the leaving group. 

Before cyclization can occur, however, there has to be a change in stereochemistry at the 2,3-double bond, from E in geranyl diphosphate to Z, as in neryl diphosphate. It should be reasonably clear that geranyl diphosphate cannot possibly cyclize to a six-membered ring, since the carbon atoms that need to bond are not close enough to each other. The change in stereochemistry is achieved through allylic cations and linalyl diphosphate (see Box 6.4). 

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