Genotyping single nucleotide

Blondal T, Waage BG, Smarason SV, Jonsson F, Fjalldal SB, et al. 2003. A novel MALDI-TOF based methodology for genotyping single nucleotide polymorphisms. Nucleic Acids Res 15 el55. 

Kwok, P. Y. (2001) Methods for genotyping single nucleotide polymorphisms. Anna Rev Genomics Hum Genet. 2, 235-258. 

Hsu, T.M. Law, S.M. Duan, S. Neri, B.P. Kwok, P.-Y. Genotyping single-nucleotide polymorphisms by the invader assay with dual-color fluorescence polarization detection. Clin. Chem. 2001, 47, 1373-1377. 

Syvanen AC. Accessing genetic variation genotyping single-nucleotide polymorphisms. Nat Rev Genet 2001 2 930-942. 

Tost, J. and Gut, 1. G. (2002) Genotyping single nucleotide polymorphisms by mass spectrometry. Mass Spectrom. Rev.s 21, 388-418. 

Muhammad WT, Fox F, Fox A, Cotham W, and Walla M (2002) Electrospray ionization quadrupole time-of-flight mass spectrometry and quadrupole mass spectrometry for genotyping single nucleotide substitutions in intact polymerase chain reaction products in K-ras and p53. Rapid Communications in Mass Spectrometry 16 2278-2285. 

Lovmar, L. and A. Syvanen, Genotyping single-nucleotide polymorphisms by minisequencing using tag arrays. Methods in Molecular Medicin, 2005.114 p. 79-92. 

Allele variant forms oftheDNA sequence at a specified locus. For example, alleles at a single-nucleotide polymorphism (SNP) are characterized by the nucleotide that is changing. The combination of two alleles at a locus constitutes a genotype. 

Chen, X. and Kwok, P. Y. (1999). Homogeneous genotyping assays for single nucleotide polymorphisms with fluorescence resonance energy transfer detection. Genet. Anal. 14, 157-63. 

Armstrong, B. et al. (2000) Suspension arrays for high throughput, multiplexed single nucleotide polymorphism genotyping. Cytometry 40, 102-108. 

Zhong, X., Reynolds, R., Kidd, J.R., Kidd, K.K., Jenison, R., Marlar, R.A., and Ward, D.C. (2003) Single-nucleotide polymorphism genotyping on optical thin-film biosensor chips. PNAS 100, 11559-11564. 

Wang, D.G., et al., "Large-Scale Identification, Mapping, and Genotyping of Single-Nucleotide Polymorphisms in the Human Genome," Science 280, 1077-1082 (1998). 

E. S. (1998). Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome. Science 280, 1077-1082. 

Misra A, Hong JY, Kim S (2007) Multiplex genotyping of cytochrome p450 single-nucleotide polymorphisms by use of MALDI-TOF mass spectrometry. Clin Chem 53 933-939 Moon YJ, Zhang S, Brazeau DA, Morris ME (2007) Effects of the flavonoid biochanin A on gene expression in primary human hepatocytes and human intestinal cells. Mol Nutr Food Res 51 317-323... 

Keywords Bioinformatics database disease dmg function genotype interaction pathway pharmacogenomics phenotype single-nucleotide polymorphism (SNP) software stmcture systems biology. 

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