Genome scale reconstructions

Famili I, Forster J, Nielsen J, Palsson BO. Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network. Proc Natl Acad Sci USA 2003 100 13134-9. 

Fang K, Zhao H, Sun C et al (2011) Exploring the metabolic network of the epidemic pathogen Burkholderia cenocepacia J2315 via genome-scale reconstruction. BMC Syst Biol 5 83... 

J. Forster, I. Famili, P. Fu, B. O. Palsson, and J. Nielsen. Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network. Genome Res., 13 244-253,2003. 

Kjeldsen, K.R. and Nielsen, J. (2009) In silica genome-scale reconstruction... 

Oh, Y-K, et al (2007) Genome-scale reconstruction of metabolic network in Bacillus suhtilis based on high-throughput phenotyping and gene essentiality data, /, Biol Chem., 282 (39), 28791-28799,... 

Godinho, M., Bielecka, A., Regenhardt, D., Timmis, K.N., Papin, J.A., and Martins dos Santos, V.A.P. (2008) Genome-scale reconstruction and analysis of the Pseudomonas putida KT2440 metabolic network facilitates applications in biotechnology. PLoS Comput. Biol, 4 (10), el000210. 

Ulas, T., Riemer, S.A., Zaparty, M., Siebers, B., and Schomburg, D. (2012) Genome-scale reconstruction and analysis of the metabolic network in the hyperthermophilic archaeon Sulfolobus solfataricus. PLoS One, 7, e43401. 

Lee J, Yun H, Feist AM, Palsson BO, Lee SY. (2008). Genome-scale reconstruction and in silica analysis of the Clostridium acetobutylicum ATCC 824 metabolic network. Appl Microbiol Biotechnol, 80, 849-862. 

Ate 0,Toksoy Oner E,Arga KY. Genome-scale reconstruction ofmetabohc network for a halophihc extremophile, Chromohalobacter salexigens DSM 3043. BMC Syst Biol 2011 5 12. 

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