Free energy simulations, types molecular dynamics

Free Energy Calculations Methods and Applications Free Energy Perturbation Calculations Free Energy Simulations Hydrogen Bonding 1 Hydrogen Bonding 2 Molecular Dynamics DNA Molecular Dynamics Simulations of Nucleic Acids Molecular Dynamics Techniques and Applications to Proteins Nucleic Acid Force Fields Poisson-Boltzmann Type Equations Numerical Methods Protein Force Fields. 

Following the early studies on the pure interface, chemical and electrochemical processes at the interface between two immiscible liquids have been studied using the molecular dynamics method. The most important processes for electrochemical research involve charge transfer reactions. Molecular dynamics computer simulations have been used to study the rate and the mechanism of ion transfer across the water/1,2-dichloroethane interface and of ion transfer across a simple model of a liquid/liquid interface, where a direct comparison of the rate with the prediction of simple diffusion models has been made. ° ° Charge transfer of several types has also been studied, including the calculations of free energy curves for electron transfer reactions at a model liquid/liquid... 

In some cases, one is interested in the structures of complex fluids only at the continuum level, and the detailed molecular structure is not important. For example, long polymer molecules, especially block copolymers, can form phases whose microstructure has length scales ranging from nanometers almost up to microns. Computer simulations of such structures at the level of atoms is not feasible. However, composition field equations can be written that account for the dynamics of some slow variable such as 0 (x), the concentration of one species in a binary polymer blend, or of one block of a diblock copolymer. If an expression for the free energy / of the mixture exists, then a Ginzburg-Landau type of equation can sometimes be written for the time evolution of the variable 0 with or without flow. An example of such an equation is (Ohta et al. 1990 Tanaka 1994 Kodama and Doi 1996)... 

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