Fluorescent detection, instrument optical filter

Biological autofluorescence in mammalian cells due to flavin coenzymes (FAD and FMN absorption, 450 nm emission, 515 nm) and reduced pyridine nucleotides (NADH absorption, 340 nm emission, 460 nm) can be problematic in the detection of fluorescence probes in tissues and cells. Fixation with aldehydes, particularly glutaraldehyde, can result in high levels of autofluorescence. This can be minimized in fixed cells by washing with 0.1% sodium borohydride in phosphate-buffered saline (5) prior to antibody incubation. Problems due to autofluorescence can be minimized by selecting probes and optical filters that maximize the fluorescence signal relative to the autofluorescence. Other factors that limit IF include the performance of the detection instrument (i.e. how well the microscope has been calibrated and set), the specificity of the antibodies, and the specimen preparation. 

Figure 3.40 shows the layout of a typical Raman analyzer that uses fiber optics for process application. In a Raman process system, light is filtered and delivered to the sample via excitation fiber. Raman-scattered light is collected by collection fibers in the fiber-optic probe, filtered, and sent to the spectrometer via return fiber-optical cables. A charge-coupled device (CCD) camera detects the signal and provides the Raman spectrum. To take advantage of low-noise CCD cameras and to minimize fluorescence interference, NIR diode lasers are used in process instruments. 

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