Enzymes from

Figure Bl.9.9. Comparison of the distance distribution fiinction p(r) of a RNA-polymerase core enzyme from the experimental data (open circle) and the simulation data (using two different models). This figure is duplicated from [27], with pennission from Elsevier Science.

Figure C3.2.17. Diagram of a liposome-based artificial photosynthetic membrane showing the photocycle that pumps protons into the interior of the liposome and the CFqF j-ATP synthase enzyme. From [55],...

Enzymes for Extreme Conditions. The possibihty of using enzymes from extremophiles, which thrive in oil wells, hot temperatures, freezing conditions, etc, is being explored for the removal of environmental contaminants and survival at extreme temperatures (see Wastes, HAZARDOUS WASTE TREATlffiNT BlORETffiDIATION (SuPPLET NT)). 

Leucrose, 6-0-(a-D-glucopyranosyl)-P-D-fmctopyranose [7158-70-5] is synthesized from sucrose usiag a dextranase enzyme from l euconostoc mesenteriodes and a small proportion of fmctose (2%). Pfeifer Langen of Germany have developed a production process for leucrose that iavolves extraction of the enzyme, treatment with 65% aqueous solution of sucrose and fmctose (1 2 wt/wt) at 25°C, separation of the product from fmctose by ion-exchange column chromatography, and crystallization. The product has not yet been launched on the market as of this writing (1996). 

There are two distinct groups of aldolases. Type I aldolases, found in higher plants and animals, require no metal cofactor and catalyze aldol addition via Schiff base formation between the lysiae S-amino group of the enzyme and a carbonyl group of the substrate. Class II aldolases are found primarily ia microorganisms and utilize a divalent ziac to activate the electrophilic component of the reaction. The most studied aldolases are fmctose-1,6-diphosphate (FDP) enzymes from rabbit muscle, rabbit muscle adolase (RAMA), and a Zn " -containing aldolase from E. coli. In vivo these enzymes catalyze the reversible reaction of D-glyceraldehyde-3-phosphate [591-57-1] (G-3-P) and dihydroxyacetone phosphate [57-04-5] (DHAP). 

Lipoxygenase-Catalyzed Oxidations. Lipoxygenase-1 catalyzes the incorporation of dioxygen into polyunsaturated fatty acids possessing a l(Z),4(Z)-pentadienyi moiety to yield ( ),(Z)-conjugated hydroperoxides. A highly active preparation of the enzyme from soybean is commercially available in purified form. From a practical standpoint it is important to mention that the substrate does not need to be in solution to undergo the oxidation. Indeed, the treatment of 28 g/L of linoleic acid [60-33-3] with 2 mg of the enzyme results in (135)-hydroperoxide of linoleic acid in 80% yield... 

PRA-isomerase lGP-synthase, a bifunctional enzyme from E. coli that catalyzes two reactions in the synthesis of tryptophan (Figure 4.6), has a polypeptide chain that forms two a/p barrels. The stmcture of this enzyme, solved at 2.8 A in the laboratory of Hans Jansonius in Basel, Switzerland, showed that residues 48-254 form one barrel with IGP-synthase activity, while residues 255-450 form the second barrel with PRA-isomerase activity (Figure 4.7). 

In Bacillus snbtilis these two reactions are catalyzed by two separate enzymes that have amino acid sequences homologous to the corresponding regions of the bifunctional enzyme from E. coli, and thus each forms a barrel... 

ENZYMATIC ANALYSIS WITH CARBOXYPEPTIDASES. Carboxypeptidases are enzymes that cleave amino acid residues from the C-termini of polypeptides in a successive fashion. Four carboxypeptidases are in general use A, B, C, and Y. Carboxypeptidase A (from bovine pancreas) works well in hydrolyzing the C-terminal peptide bond of all residues except proline, arginine, and lysine. The analogous enzyme from hog pancreas, carboxypeptidase B, is effective only when Arg or Lys are the C-terminal residues. Thus, a mixture of carboxypeptidases A and B liberates any C-terminal amino acid except proline. Carboxypeptidase C from citrus leaves and carboxypeptidase Y from yeast act on any C-terminal residue. Because the nature of the amino acid residue at the end often determines the rate at which it is cleaved and because these enzymes remove residues successively, care must be taken in interpreting results. Carboxypeptidase Y cleavage has been adapted to an automated protocol analogous to that used in Edman sequenators. 

The individual steps in the elongation of the fatty acid chain are quite similar in bacteria, fungi, plants, and animals. The ease of purification of the separate enzymes from bacteria and plants made it possible in the beginning to sort out each step in the pathway, and then by extension to see the pattern of biosynthesis in animals. The reactions are summarized in Figure 25.7. The elongation reactions begin with the formation of acetyl-ACP and malonyl-ACP, which... 

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