ENZYME program

Figure 12. Menu of the ENZYME program. One layer of constructed substrate binding domain is presented.

To Start to execution of COMPARE, type RUN COMPARE after exiting ENZYME program. Then choose option READ CUBEFILE and give the name of first cube file and also the name of second cube file. After it choose option DISPLAY CUBEFILE and it gives the overlaid picture of these cube files. The overlaid cubes can be seen with different colors forbidden in first cube file (black), forbidden in both cube files (red), conflict in first cube file (blue), conflict in second cube file (yellow), and allowed in both cube files (green). In the end of the program it gives the number of conflicts in both cube files. 

The development of malathion in 1950 was an important milestone in the emergence of selective insecticides. Malathion is from one-half to one-twentieth as toxic to insects as parathion but is only about one two-hundredths as toxic to mammals. Its worldwide usage in quantities of thousands of metric tons in the home, garden, field, orchard, woodland, on animals, and in pubHc health programs has demonstrated substantial safety coupled with pest control effectiveness. The biochemical basis for the selectivity of malathion is its rapid detoxication in the mammalian Hver, but not in the insect, through the attack of carboxyesterase enzymes on the aUphatic ester moieties of the molecule. 

Researchers at the MoneU Center (Philadelphia, Pennsylvania) are using a variety of electrophysical and biochemical techniques to characterize the ionic currents produced in taste and olfactory receptor cells by chemical stimuli. These studies are concerned with the identification and pharmacology of the active ion channels and mode of production. One of the techniques employed by the MoneU researchers is that of "patch clamp." This method aUows for the study of the electrical properties of smaU patches of the ceU membrane. The program at MoneU has determined that odors stimulate intraceUular enzymes to produce cycUc adenosine 3, 5 -monophosphate (cAMP). This production of cAMP promotes opening of the ion channel, aUowing cations to enter and excite the ceU. MoneU s future studies wiU focus on the connection of cAMP, and the production of the electrical response to the brain. The patch clamp technique also may be a method to study the specificity of receptor ceUs to different odors, as weU as the adaptation to prolonged stimulation (3). 

The relative fluctuations in Monte Carlo simulations are of the order of magnitude where N is the total number of molecules in the simulation. The observed error in kinetic simulations is about 1-2% when lO molecules are used. In the computer calculations described by Schaad, the grids of the technique shown here are replaced by computer memory, so the capacity of the memory is one limit on the maximum number of molecules. Other programs for stochastic simulation make use of different routes of calculation, and the number of molecules is not a limitation. Enzyme kinetics and very complex oscillatory reactions have been modeled. These simulations are valuable for establishing whether a postulated kinetic scheme is reasonable, for examining the appearance of extrema or induction periods, applicability of the steady-state approximation, and so on. Even the manual method is useful for such purposes. 

SCF, see Self-consistent field treatment (SCF) Schroedinger equation, 2,4,74 Secular equations, 6,10, 52 solution by matrix diagonalization, 11 computer program for, 31-33 Self-consistent field treatment (SCF), of molecular orbitals, 28 Serine, structure of, 110 Serine proteases, 170-188. See also Subtilisin Trypsin enzyme family comparison of mechanisms for, 182-184, 183... 

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