Display options

File Storage Display Options Scecial Window Help... 

Figure 5.9 An exanple of display options for the cfaroMatographic and spectroscopic data obtained with a photodiode array detector.

Note that PROC BOXPLOT uses SAS/GRAPH statements such as GOPTIONS and SYMBOL statements. There is a vast array of display options in the PROC BOXPLOT PLOT statement not used here. You may want to investigate those options if you decide to enhance the box plot further. 

Load the reference spectrum D NI /IRDATA GLUCOSE 1D H GHNO 1D 008999.IR from the NOE data for glucose. From the Display pull-down menu choose the Dual Display option and select the NOE-difference spectrum 007999.1 R in the same directory. 

Using the last data set inspect the Display Options menu available via the Display pull-down menu tor the normal, the dual and the multiple display modes. Try out the various effects of the various options. 

Layout This group box contains self-explanatory display options for the plot. 

Items that are currently active in the Spectrum window can be selected for the hardcopy or Preview output by checking the respective filters in the Display Options group. 

Display) dialog box. Additional dual/multi display options can be set either by choosing... 

From the series of selectively decoupled spectra of glucose load the reference spectrum D NMRDATA GLUCOSE 1D H GHHD 001999.1R. From the Display pull-down menu choose the Multiple Display option. In the Select Multi Display Mode dialog box select all the seven spectra, starting with the reference spectrum. Click on the OK button to close the dialog box and initialize the multiple display. Click on the File Param. button and inspect the... 

Load the raw data of the ID H experiment measured for peracetylated glucose D NMRDATA GLUCOSE 1D H GH 002001.FID and perform a Fourier transformation. Use either the FT button in the button panel or from the Process pull-down menu choose the FT option. In the DC Correction dialog box click on the No button. Note that the calculated spectrum is incorrectly phased. Use the dual display option to compare this spectrum, showing the ring protons, with the correctly phased spectrum D NMRDATA GLUCOSE 1 D H GH 002999.l R. Exit the dual display and from the Process pull-down menu choose the Phase Correction option. The... 

Reload the same 2D raw data set. use the same basic processing parameters as above, but now set in the F1 Processing parameters list MEmod to LPfc and NCOEF to 8. Process the data the same way as above, store the 2D spectrum and the same columns numbers. Use the Multiple display option in ID WIN-NMR to compare corresponding columns with respect to signal-to-noise. resolution and spectral artifacts. 

Load the reference FID of the selectively, homodecoupled H experiment D NMRDATA GLUCOSE 1D H GHHD 001001.FID. Use File Algebra to calculate the differences between the reference FID and the irradiated FIDs. Store the results and process the data in the same way to obtain the decoupling difference spectra. Use the Multiple Display option to display the difference spectra together with the reference spectrum. Note that this same procedure can be applied to 1D NOE or any other selective 1D experiment. 

Load the raw data of the selective pseudo 2D H H NOE experiment D NMRDATA OLIGOSAC 1D H OHNO 2D 001001.SER. Decompose the data matrix into a series of 1D FIDs, calculate the difference FIDs and process the whole series following the procedures as outlined in previous chapters. Exploit the options for automatic and serial processing for this purpose. Use the multiple display option to compare the individual NOE spectra and plot the... 

Hint Use the multiple display option and display each of the NOE (ROE) difference spectra together with the ID TOCSY spectra of the individual monomer units to recognize and assign intra- and inter-residue NOEs (ROEs) respectively. Use different colours to differentiate between the spin systems of the individual monomers and use a special colour to mark NOEs among different monomers on your hardcopy. Cross check your findings with the conclusions extracted from previous data and carefully check the consistency of your H assignments in all the spectra. 

File Edit Model Geometry Build Setup Display Options Help... 

The common atomic coordinate files for 3D structure in biochemistry is PDB format. The pdb files of polysaccharides, proteins, and nucleic acids can be retrieved from the Protein Data Bank at RCSB (http //www.rcsb.org/pdb/). On the home page (Figure 4.15), enter PDB ID (check the box query by PDB id only ) or keywords (check the box match exact word ) and click Find a structure button. Alternatively, initiate search/retrieval by selecting SearchLite. On the query page, enter the keyword (e.g., the name of ligand or biomacromolecule) and click Search button. Select the desired entry from the list of hits to access Summary information of the selected molecule. From the Summary information, select Download/Display file and then PDB Text and PDB noncompression format to retrieve the pdb file. In order to display 3D structure online, choose View structure followed by selecting one of 3D display options. The display can be saved in. jpg or. gif image format. 

Figure 12.2. Advanced search for PDB file. From the PDB home page, select Advanced search field to open the PDB Search Fields form as shown. The advanced search enables the user to customize search fields including PDB identifier, author, chain types (protein, enzyme, DNA, and RNA, etc.), compound information, PDB header, experimental technique, text search, and result display options.

With Job type tab active, select minimize energy, display options and set minimum RMS to 0.100. 

Display Options (apply lor all lines and levels searches) Format output [as formatted table (HTML) J Display table " enlirely jjPagc size ft3 Level Units cm-1 3... 

To permanently change all values stored on a worksheet to their displayed values, use the Precision As Displayed option. Once this command has been invoked, you can t restore the original values. 

Excel Tip. You can set different display options for the two windows. Display values in one window and formulas in another to see the effect of changes. 

Display Configures screen savers, colors, display options, and monitor drivers. 

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