Electron-transfer flavoprotein:ubiquinone

J.-J. P. Kim, J. Zhang, and F. E. Frerman, Three-Dimensional Structure of Pocine Electron Transfer Flavoprotein-Ubiquinone Oxidoreductase, in Flavins and Flavoproteins 2002 , eds. S. K. Chapman, R. N. Perham, and N. S. Scrutton, Rudolf Weber, Berlin, 2002, p. 77. 

Figure 37.2 Cartoon depicting enzymes participating in mitochondrial P-oxidation and part of the respiratory chain. Acyl-CoA substrates derived from fatty acid and amino acid metabolism are oxidized by several flavin-containing acyl-CoA dehydrogenases (ACAD). Electrons obtained from this reaction are shuttled to the respiratory chain via the ETF/ETF QO hub (electron-transfer flavoprotein and electron-transfer flavoprotein ubiquinone oxidoreductase). ETF QO is able to transfer electrons to ubiquinone (Q) (such as respiratory complexes I and II) whose subsequent transfer down to complex IV will result in energy conservation and ATP production. See list of abbreviations for definitions.

Figure 37.5 Crystallographic structure of pig electron-transfer flavoprotein ubiquinone oxidoreductase (ETF QO). The flavin and iron-sulfur cluster cofactors, as well as the ubiquinone substrate are shown in white sticks. An amphipatic region of ETF QO establishes interactions with membrane and accommodates the ubiquinone substrate.

Zhang, J., Frerman, F.E., and Kim, J.J., 2006. Structure of electron transfer flavoprotein-ubiquinone oxidoreductase and electron transfer to the mitochondrial ubiquinone pool. Proceedings of the National Academy of Sciences of the United States of America. 103 16212-16217. 

FeS Iron-sulfur protein ETF Electron-transferring flavoprotein Ep Elavoprotein Q Ubiquinone Cyt Cytochrome... 

In addition to NAD and flavoproteins, three other types of electron-carrying molecules function in the respiratory chain a hydrophobic quinone (ubiquinone) and two different types of iron-containing proteins (cytochromes and iron-sulfur proteins). Ubiquinone (also called coenzyme Q, or simply Q) is a lipid-soluble ben-zoquinone with a long isoprenoid side chain (Fig. 19-2). The closely related compounds plastoquinone (of plant chloroplasts) and menaquinone (of bacteria) play roles analogous to that of ubiquinone, carrying electrons in membrane-associated electron-transfer chains. Ubiquinone can accept one electron to become the semi-quinone radical ( QH) or two electrons to form ubiquinol (QH2) (Fig. 19-2) and, like flavoprotein carriers, it can act at the junction between a two-electron donor and a one-electron acceptor. Because ubiquinone is both small and hydrophobic, it is freely diffusible within the lipid bilayer of the inner mitochondrial membrane and can shuttle reducing equivalents between other, less mobile electron carriers in the membrane. And because it carries both electrons and protons, it plays a central role in coupling electron flow to proton movement. 

Some electrons enter this chain of carriers through alternative paths. Succinate is oxidized by succinate dehydrogenase (Complex II), which contains a flavoprotein that passes electrons through several Fe-S centers to ubiquinone. Electrons derived from the oxidation of fatty acids pass to ubiquinone via the electron-transferring flavoprotein. 

Fig. 5.2. Possible metabolic pathways in facultative anaerobic mitochondria. Shaded boxes show components of the electron-transport chain used during hypoxia, open boxes are components used during aerobiosis, and the hatched boxes (complex I and ATP-synthase) are components used under aerobic as well as anaerobic conditions. ASCT acetate succinate CoA-transferase, C cytochrome c, Cl, CIII and CIV complexes I, III and IV of the respiratory chain, CITR citrate, ECR enoyl-CoA reductase (such as present in Ascaris suum), ETF electron-transfer flavoprotein, ETF RQ OR electron-transfer flavoproteimrhodoquinone oxidoreductase, FRD fumarate reductase, FUM fumarate, MAE malate, OXAC oxaloacetate, PYR pyruvate, RQ rhodoquinone, SDH succinate dehydrogenase, SUCC succinate, Succ-CoA succinyl-CoA, TER trans-2-enoyl-CoA reductase (such as present in E. gracilis), UQ ubiquinone...

Figure 17.4 The electron transport chain of mitochondria. Triangles indicate sites of inhibition by various compounds. Cyt, cytochrome ETF, electron transfer flavoprotein. (Reproduced with permission from Moreadith RW, Batshaw ML, Ohnishi T, Kerr D, Knox B, Jackson D, Hruben R, Olson J, Reynafarje B, Lehninger AL. Deficiency of the iron-sulfur clusters of mitochondrial reduced nicotinamide-adenine dinucleotide-ubiquinone oxidoreductase (complex I) in an infant with congenital lactic acidosis J Clin Invest 74 685-697, 1984.)...

Figure 18.5 The glycerol-3-phosphate shuttle. This shuttle is used to bring electrons from cytosolic NADH into mitochondria. The mitochondrial glycerol-3-phosphate dehydrogenase with its FAD prosthetic group is bound to the inner mitochondrial membrane. ETF is electron transfer flavoprotein, which extracts electrons from the FADH2 of mitochondrial glycerol-3-phosphate dehydrogenase and with it reduces ubiquinone (UQ).

Because reduced redox cofactors, NADH and FADH2, are produced in the mitochondria, there is no need for shuttle mechanisms to reoxidize them via oxidative phosphorylation. NADH is reduced directly by complex I. FADH2 is reduced by the electron transfer flavoprotein, which then reduces ubiquinone. See Chapter 17 for details. 

A distinct electron transfer flavoprotein (ETF) is the single-electron acceptor for a variety of flavoprotein dehydrogenases, including acyl CoA, glutaryl CoA, sarcosine, and dimethylglycine dehydrogenases. It then transfers the electrons to ETF-ubiquinone reductase, the iron-sulfur flavoprotein that reduces ubiquinone in the mitochondrial electron transport chain. 

The mitochondrial respiratory chain, which contains at least 13 Fe-S clusters (Figure 6), perhaps best illustrates the importance of Fe-S clusters in membrane-bound electron transport. Electrons enter via three principal pathways, from the oxidation of NADH to NAD+ (NADH-ubiquinone oxidoreductase or Complex I) and succinate to fumarate (succinate ubiquinone oxidoreductase or Complex II), and from the /3-oxidation of fatty acids via the electron transferring flavoprotein (ETF-ubiquinone oxidoreductase). All three pathways involve a complex Fe S flavoprotein dehydrogenase, that is, NADH dehydrogenase, succinate dehydrogenase, and ETF dehydrogenase, and in each case the Fe-S clusters mediate electron transfer from the flavin active site to the ubiquinone pool via protein-associated ubiquinone. 

Fig. 3.1. A, The respiratory chain. Q and c stand for ubiquinone and cytochrome c, respectively. Auxiliary enzymes that reduce ubiquinone include succinate dehydrogenase (Complex II), a-glycerophosphate dehydrogenase and the electron-transferring flavoprotein (ETF) of fatty acid oxidation. Auxiliary enzymes that reduce cytochrome c include sulphite oxidase. B, Thermodynamic view of the respiratory chain in the resting state (State 4). Approximate values are calculated according to the Nernst equation using oxidoreduction states from work by Muraoka and Slater, (NAD, Q, cytochromes c c, and a oxidation of succinate [6]), and Wilson and Erecinska (b-562 and b-566 [7]). The NAD, Q, cytochrome b-562 and oxygen/water couples are assumed to equilibrate protonically with the M phase at pH 8 [7,8]. E j (A ,/ApH) for NAD, Q, 6-562, and oxygen/water are taken as —320 mV ( — 30 mV/pH), 66 mV (- 60 mV/pH), 40 mV (- 60 mV/pH), and 800 mV (- 60 mV/pH) [7-10]. FMN and the FeS centres of Complex I (except N-2) are assumed to be in redox equilibrium with the NAD/NADH couple, FeS(N-2) with ubiquinone [11], and cytochrome c, and the Rieske FeS centre with cytochrome c [10]. The position of cytochrome a in the figure stems from its redox state [6] and its apparent effective E -, 285 mV in...

Frerman FE, Goodman SI. Defects of the electron transfer flavoprotein and electron transfer flavopro-tein-ubiquinone oxidoreductase glutaric acidemia type II. In Scriver CR, Beaudet AL, Valle D, Sly WS, Childs B, Kinzler KW, et al, eds. The metabofic molecular bases of inherited disease, 8th ed. New York McGraw-Hill, 2001 2357-65. 

Over the years, there have been numerous reports of oxidase preparations that contain polypeptide components, additional to those described above. As yet no molecular probes are available for these, and so their true association with the oxidase is unconfirmed. There are many reports in the literature describing the role of ubiquinone as an electron transfer component of the oxidase, but its involvement is controversial. Quinones (ubiquinone-10) have reportedly been detected in some neutrophil membrane preparations, but other reports have shown that neither plasma membranes, specific granules nor most oxidase preparations contain appreciable amounts of quinone, although some is found in either tertiary granules or mitochondria. Still other reports suggest that ubiquinone, flavoprotein and cytochrome b are present in active oxidase preparations. Thus, the role of ubiquinone and other quinones in oxidase activity is in doubt, but the available evidence weighs against their involvement. Indeed, the refinement of the cell-free activation system described above obviates the requirement for any other redox carriers for oxidase function. 

In the overall reaction catalyzed by the mitochondrial respiratory chain, electrons move from NADH, succinate, or some other primary electron donor through flavoproteins, ubiquinone, iron-sulfur proteins, and cytochromes, and finally to 02. A look at the methods used to determine the sequence in which the carriers act is instructive, as the same general approaches have been used to study other electron-transfer chains, such as those of chloroplasts. 

The lipid-soluble ubiquinone (Q) is present in both bacterial and mitochondrial membranes in relatively large amounts compared to other electron carriers (Table 18-2). It seems to be located at a point of convergence of the NADH, succinate, glycerol phosphate, and choline branches of the electron transport chain. Ubiquinone plays a role somewhat like that of NADH, which carries electrons between dehydrogenases in the cytoplasm and from soluble dehydrogenases in the aqueous mitochondrial matrix to flavoproteins embedded in the membrane. Ubiquinone transfers electrons plus protons between proteins within the... 

Electron transfer to 02 occurs stepwise, through a series of flavoproteins, cytochromes (heme-proteins), iron-sulfur proteins, and a quinone. Most of the electron carriers are collected in four large complexes, which communicate via two mobile carriers— ubiquinone (UQ) and cytochrome c. Complex I transfers electrons from NADH to UQ, and complex II transfers electrons from succinate to UQ. Both of these complexes contain flavins and numerous iron-sulfur centers. Complex III, which contains three cyto-... 

Mitochondria contain ubiquinone (also known as coenzyme Q), which differs from plastoquinone A (Chapter 5, Section 5.5B) by two methoxy groups in place of the methyl groups on the ring, and 10 instead of 9 isoprene units in the side chain. A c-type cytochrome, referred to as Cyt Ci in animal mitochondria, intervenes just before Cyt c a h-type cytochrome occurring in plant mitochondria is involved with an electron transfer that bypasses cytochrome oxidase on the way to 02. The cytochrome oxidase complex contains two Cyt a plus two Cyt a3 molecules and copper on an equimolar basis with the hemes (see Fig. 5-16). Both the Fe of the heme of Cyt a3 and the Cu are involved with the reduction of O2 to H20. Cytochromes a, >, and c are in approximately equal amounts in mitochondria (the ratios vary somewhat with plant species) flavoproteins are about 4 times, ubiquinones 7 to 10 times, and pyridine nucleotides 10 to 30 times more abundant than are individual cytochromes. Likewise, in chloro-plasts the quinones and the pyridine nucleotides are much more abundant than are the cytochromes (see Table 5-3). 

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