Drugs, electronic structure

Bray KL (2001) High Pressure Probes of Electronic Structure and Luminescence Properties of Transition Metal and Lanthanide Systems. 213 1-94 Bronstein LM (2003) Nanoparticles Made in Mesoporous Solids. 226 55-89 Bronstrup M (2003) High Throughput Mass Spectrometry for Compound Characterization in Drug Discovery. 225 275-294... 

Equation 4.9 has been extensively applied to study the mechanisms of electrophilic (e.g., protonation) reactions, drug-nucleic acid interactions, receptor-site selectivities of pain blockers as well as various other kinds of biological activities of molecules in relation to their structure. Indeed, the ESP has been hailed as the most significant discovery in quantum biochemistry in the last three decades. The ESP also occurs in density-based theories of electronic structure and dynamics of atoms, molecules, and solids. Note, however, that Equation 4.9 appears to imply that p(r) of the system remains unchanged due to the approach of a unit positive charge in this sense, the interaction energy calculated from V(r) is correct only to first order in perturbation theory. However, this is not a serious limitation since using the correct p(r) in Equation 4.9 will improve the results. 

The PE spectra of some other alkaloids like methadone and the opiate narcotics morphine, codeine and heroin have been investigated by Klasinc and coworkers95. Also in this study structure-activity relationships based on IPs were sought but not found. Since the interaction of the drug molecule with the receptor is highly specific, it is not unreasonable that the molecular rather than the electronic structure is more important for the physiological activity. 

The rate of renal excretion in the rat (6, 7) is best correlated by Equations 38 and 44. The term correcting the effect of dissociation in the tubule is markedly significant in this case. Without this term, the correlation becomes much poorer (Equations 39-41). For rabbits (7), Equation 47 shows the best correlation. The coefficient of the ApKA term in Equation 47 is negative, in contrast to that in Equations 38 and 44. Since the 95% confidence intervals of coefficients do not overlap, susceptibility of the tubular membrane to the electronic structure of permeating drugs probably differs between rats and rabbits. 

There arc fundamental dil fcrcnees between the quantum and molecular mechanics approaches. They illustrate the dilemma that cun confront the medicinal chemist. Quantum mechanics is derived from basic theoretical principles at the atomic level. The model itself is exact, but the equations used in the technique are only approximate. The molecular properties are derived from the electronic structure of the molecule. The assumption is made that the distribution of electrons within a molecule can be described by a linear. sum of functions that represent an atomic orbital. (For carbon, this would be s./>,./>,. etc.) Quantum mechanics i.s computation intensive, with the calculation time for obtaining an approximate solution increasing by approximately N time.s. where N i.s the number of such functions. Until the advent of the high-.speed supercomputers, quantum mechanics in its pure form was re.stricted to small molecules. In other words, it was not practical to conduct a quantum mechanical analysis of a drug molecule. 

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