Command Window clearing

The home page of WebPhylip consists of three windows. The left window is the command window for selecting and issuing the execution (Run) of the analysis/ operation. The analysis results appear in the upper window. The lower window is the query window with options, a query box for pasting the query sequences (in Phylip format), and Submit/Clear buttons. To perform phylogenetic analysis, select DNA/Protein for Phylogeny method in the left window to open the available analytical methods (parsimony, parsimony + branch bound, compatibility, maximum likelihood, and maximum likelihood with molecular clock for DNA whereas only parsimony for protein). Click Run (under the desired method) to open the query window with options. Select the appropriate Input type (either interleaved or sequential), paste the query sequences and click the Submit button. The analytical results are displayed in the upper window (Figure 13.4). 

Instead of the MATL AB command mode, one could also use the identification graphical user interface (ID-GUI) to identify the model. Type clear and clc in the MATLAB command window to clear the workspace. Then type load pll to load the data and whos to see the variable names, they should be JTand T. Now type ident to start the ID-GUI after which Fig. 24.6 should appear. 

The clc command clears the command window and homes the cursor ... 

The actions associated with the command buttons of this window are clear from the button labels. On completion of a calculation (Figure 1.13), a Print command button appears so that a hard copy of the result of any calculation can be made. 

---