Clades, resolved

Note N = number of taxa Chars. = alignable characters I = informative alignable characters % Inf. = percentage of informative alignable characters C.I. = consistency index value, calculated without autapomorphies R.I. = retention index value MPTs = most parsimonious trees from all identified tree islands (see Materials and Methods) Steps = steps in parsimonious trees Clades = clades resolved of those in the all-genes consensus tree value (Hillis, 1991). 

Separate analyses of the ITS, tmL-trnF and atpB-rbcL sequences showed no conflict between clades resolved with >65% bootstrap support in any of the individual analyses, and the sequences were therefore combined. The combined analysis included 265 parsimony informative characters (Table 10.3). The analysis of the combined ITS, atpJi rbcL and trriL trriP sequences gave six equally parsimonious trees (length = 1015, Cl = 0.769, R1 = 0.696). The strict consensus tree with bootstrap values is shown in Figure 10.1. 

Fig. 2.2 Phylogenetic relationships within the peroxidase-cyclooxygenase superfamily. This circle tree was obtained in MEGA package [13] after compressing all resolved branches from 160 full sequences of this superfamily to main clades. Seven subfamilies [10] are clearly discernible...

Meteoriopsis has been easy to distinguish from other Meteoriaceae by its spreading, squarrose leaves. Phylogenetic analyses resolve it with very high support in the same clade with Pseudospir-... 

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