Chloroplast DNA sequences

K. H. Wolfe, M. Gouy, Y-W Yang, P. M. Sharp, and W. H. Li, Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data. Proc. Nall. Acad. Sci. U.S.A. 86 6201-6205 (1989). 

Turmel M, Otis CH, Lemieux C. The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea Insights into the architecture of ancestral chloroplast genomes. Proc Natl... 

Hentschei, J., Zhu, R.-L., Long, D.G. et ai. (2007). A phyiogeny of Porella (Porellaceae, Jungermarmiopsida) based on nuclear and chloroplast DNA sequences. Molecular Phylogenetics and Evolution 45,693-705. 

For the first step of the analysis of PSI biogenesis, we determined which subunits of PSI are nuclear-encoded. PSI complex was prepared from several species of Nicotiana, and each subunit was separated by high resolution LDS PAGE. Partial amino acid sequences were determined for each subunit, and compared with the amino acid sequences deduced from tobacco chloroplast DNA sequence in order to determine which subunits are chloroplast-encoded. As far as the PSI subunits having mol. wt. from 5.6 kDa to 20 kDa are concerned, it was only psaC protein that was proved to be of chloroplast origin. All the others, some of which are blocked at their N termini, are not coded for by chloroplast DNA, indicating that they are of nuclear origin. 

Ley, A. C., Hardy, O. J., (2010). Species delimitation in the Central African herbs Haumania (Marantaceae) using georeferenced nuclear and chloroplastic DNA sequences. Molecular Phylogenetics and Evolution 57, 859. 

De Luna, E., Buck, W. R., Akiyama, H., Arikawa, T., Tsubota, H., Gonzdlez, D., Newton, A. E. and Shaw, A. J. (2000) Ordinal phylogeny within the hypnobryalean pleurocarpous mosses inferred from cladistic analysis of three chloroplast DNA sequence data sets tmL-F, rps4, and rbcL. Bryologist, 103 242-256. 

Vandeipoorten, A., Hedenas, L., Cox, C. J. and Shaw, A. J. (2002) Circumscription, classification, and taxonomy of Amblystegiaceae (Bryopsida) inferred from nuclear and chloroplast DNA sequence data and morphology. Taxon, 51 115-122, 633. 

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