Amino acid matrix collagen

AUysine The e-amino group of lysine has been enzymatically modified to an aldehyde group. Apparent density Calculated as the weight of the dry collagen matrix per unit volume of matrix. Ai inine (Ai ) One of the amino acids in collagen molecules. 

Recall that collagen is an extracellular matrix protein that serves as a major constituent of many connective tissues (see figs. 4.10 to 4.13). Collagen fibrils have a distinctive banded pattern with a periodicity of 680 A. Individual fibrils are composed of three polypeptide chains wound around one another in a right-handed helix with a total length of 3,000 A. Each of the polypeptide chains in the triple helix has a repetitious tripeptide sequence, Gly-X-Y, where X is frequently a proline and Y is frequently a hy-droxyproline. The latter amino acid is not one of the 20 that are specified genetically, so it must be formed posttransla-tionally by a modification of some of the prolines. 

Tissue also contains some endogenous species that exhibit fluorescence, such as aromatic amino acids present in proteins (phenylalanine, tyrosine, and tryptophan), pyridine nucleotide enzyme cofactors (e.g., oxidized nicotinamide adenine dinucleotide, NADH pyridoxal phosphate flavin adenine dinucleotide, FAD), and cross-links between the collagen and the elastin in extracellular matrix.100 These typically possess excitation maxima in the ultraviolet, short natural lifetimes, and low quantum yields (see Table 10.1 for examples), but their characteristics strongly depend on whether they are bound to proteins. Excitation of these molecules would elicit background emission that would contaminate the emission due to implanted sensors, resulting in baseline offsets or even major spectral shifts in extreme cases therefore, it is necessary to carefully select fluorophores for implants. It is also noteworthy that the lifetimes are fairly short, such that use of longer lifetime emitters in sensors would allow lifetime-resolved measurements to extract sensor emission from overriding tissue fluorescence. 

AMINO ACID COMPOSITION (EXPRESSED AS RESIDUES PER 1000 TOTAL RESIDUES) OF TYPICAL MATURE ELASTIN, MATRIX COLLAGEN AND MICROFIBRILLAR PROTEIN PREPARATIONS. 

Isolated from bovine ligamentum. Bovine bone matrix collagen. The lysine-derived crosslinking amino acids are not calculated (N.C.). Composition taken from ref. 2. eSee text and Figure 4. 

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