Amides shifts

NH) 1550 Proteins Amide II (secondary amide). Shifts to higher frequency with increasing hydrogen bonding. 

Figure 2 NOESY spectrum of MccJ25 in methanol recorded at 750 MHz. Sequential connections are indicated with lines and residue numbers. The excellent signal dispersion with amide shifts ranging from 9.5 to 7.5 ppm and Ha shifts from 5.5 to 3.5 ppm is indicative of the highly ordered structure.

The chemical shifts of the three alkaloids were quite similar. The N-9 amide shifts were observed toward the downfield end of the normal range for amide i N chemical shifts. The N-19 aliphatic nitrogen shifts were observed in the vicinity of 37 ppm, which is typical of secondary and tertiary aliphatic shifts. Chemical shifts for the three compounds are collected in Table 14.3. 

There are four i C=0 resonances in valinomycin. In the K+ complex the shifts of the ester C=0 are considerable (3.1 to 5.5 ppm downfield) indicating a strong interaction with the metal. The amide shifts are smaller (0.5 to 1.9) (downfield) but also indicate some ion-dipole interaction. Valinomycin and its K complex have also been studied by Fedarko et al. (186) who obtained similar results. 

Tjandra N and Bax A 1997 Solution NMR measurement of amide proton chemical shift anisotropy in N-15-enriched proteins. Correlation with hydrogen bond length J. Am. Chem. Soc. 119 8076-82... 

The mechanism of the reaction probably involves the production of bivalent carbon during the initial loss of nitrogen the group R shifte from an adjacent position to this carbon leading to the production of a keten the latter then reacts with the solvent to give an acid, an amide or an ester. 

The last isomerization is remarkable in that the triple bond can shift through a long carbon chain to the terminus, where it is fixed as the (kinetically) stable acetylide. The reagent is a solution of potassium diami no-propyl amide in 1,3-di-aminopropane. In some cases alkali metal amides in liquid ammonia car also bring about "contra-thermodynamic" isomerizations the reactions are successful only if the triple bond is in the 2-position. 

The chemical shift of the N—H proton of amides appears m the range 8 5-8 It IS often a very broad peak sometimes it is so broad that it does not rise much over the baseline and can be lost m the background noise... 

Example This example of an HN-C(O) amide torsion uses the AMBER force field. The Fourier component with a periodicity of one (n = 1) also has a phase shift of 0 degrees. This component shows a maximum at a dihedral angle of 0 degrees and minima at both -180 and 180 degrees. The potential uses another Fourier component with a periodicity of two (n = 2). 

Hydrogen bonding to a carbonyl group causes a shift to lower frequency of 40 to 60 cm k Acids, amides, enolized /3-keto carbonyl systems, and o-hydroxyphenol and o-aminophenyl carbonyl compounds show this effect. All carbonyl compounds tend to give slightly lower values for the carbonyl stretching frequency in the solid state compared with the value for dilute solutions. 

Reactions. The chemical properties of cyanoacetates ate quite similar to those of the malonates. The carbonyl activity of the ester function is increased by the cyano group s tendency to withdraw electrons. Therefore, amidation with ammonia [7664-41-7] to cyanoacetamide [107-91-5] (55) or with urea to cyanoacetylurea [448-98-2] (56) proceeds very easily. An interesting reaction of cyanoacetic acid is the Knoevenagel condensation with aldehydes followed by decarboxylation which leads to substituted acrylonitriles (57) such as (29), or with ketones followed by decarboxylation with a shift of the double bond to give P,y-unsaturated nitriles (58) such as (30) when cyclohexanone [108-94-1] is used. 

A nitrogen atom at X results in a variable downfield shift of the a carbons, depending in its extent on what else is attached to the nitrogen. In piperidine (45 X = NH) the a carbon signal is shifted by about 20 p.p.m., to ca. S 47.7, while in A-methylpiperidine (45 X = Me) it appears at S 56.7. Quaternization at nitrogen produces further effects similar to replacement of NH by A-alkyl, but simple protonation has only a small effect. A-Acylpiperidines show two distinct a carbon atoms, because of restricted rotation about the amide bond. The chemical shift separation is about 6 p.p.m., and the mean shift is close to that of the unsubstituted amine (45 X=NH). The nitroso compound (45 X = N—NO) is similar, but the shift separation of the two a carbons is somewhat greater (ca. 12 p.p.m.). The (3 and y carbon atoms of piperidines. A- acylpiperidines and piperidinium salts are all upfield of the cyclohexane resonance, by 0-7 p.p.m. 

Clearly, in the case of (66) two amide tautomers (72) and (73) are possible, but if both hydroxyl protons tautomerize to the nitrogen atoms one amide bond then becomes formally cross-conjugated and its normal resonance stabilization is not developed (c/. 74). Indeed, part of the driving force for the reactions may come from this feature, since once the cycloaddition (of 72 or 73) has occurred the double bond shift results in an intermediate imidic acid which should rapidly tautomerize. In addition, literature precedent suggests that betaines such as (74) may also be present and clearly this opens avenues for alternative mechanistic pathways. 

The NMR spectra of both the parent [2,3-f ] and [3,4-f ] pyridopyrazine systems have been analyzed (66JCS(C)999). Shift values are given in Table 3. These studies were extended to the phenomenon of covalent hydration in both systems (66JCS(C)999,79JHC301) (see Section 2.15.13.2), as well as the addition of other nucleophiles such as amide ion (79JHC301, 79JHC305). 

The present authors have found that the preparation of 7V-acetyl aziridine derivates provides the most secure method of differentiating aziridines from primary amines which are alternate reaction products in a number of cases. The infrared spectra of the former derivatives show only a peak at 1690 cm" for a tertiary amide peaks at ca. 3440 and 1530 cm" indicative of a secondary amide are absent. Acetylation also shifts the aziridine ring protons to a lower field in the NMR by ca. 1 ppm relative to the parent aziridine. The A"-acetyl aziridines are hydrolyzed with 3% methanolic potassium hydroxide. " Published NMR spectra of several 16j5,17j -aziridines reveal resonance patterns resembling those of the respective epoxides. " ... 

A likely pathway is also that in which the key stage is the addition of the second formamide molecule to the carbonyl group of the intermediate 157 to form the amide 159. The latter, with loss of water, closes the dihydropyrimidine ring 160, which undergoes aromatization to 4-metylpyrimidine via 1,4-hydrogen shift and decarbonylation. 

The ketocarbene 4 that is generated by loss of Na from the a-diazo ketone, and that has an electron-sextet, rearranges to the more stable ketene 2 by a nucleophilic 1,2-shift of substituent R. The ketene thus formed corresponds to the isocyanate product of the related Curtius reaction. The ketene can further react with nucleophilic agents, that add to the C=0-double bond. For example by reaction with water a carboxylic acid 3 is formed, while from reaction with an alcohol R -OH an ester 5 is obtained directly. The reaction with ammonia or an amine R -NHa leads to formation of a carboxylic amide 6 or 7 ... 

Conversion of Amides into Carboxylic Acids Hydrolysis Amides undergo hydrolysis to yield carboxylic acids plus ammonia or an amine on heating in either aqueous acid or aqueous base. The conditions required for amide hydrolysis are more severe than those required for the hydrolysis of add chlorides or esters but the mechanisms are similar. Acidic hydrolysis reaction occurs by nucleophilic addition of water to the protonated amide, followed by transfer of a proton from oxygen to nitrogen to make the nitrogen a better leaving group and subsequent elimination. The steps are reversible, with the equilibrium shifted toward product by protonation of NH3 in the final step. 

Basic hydrolysis occurs by nucleophilic addition of OH- to the amide carbonyl group, followed by elimination of amide ion (-NH2) and subsequent deprotonation of the initially formed carboxylic acid by amide ion. The steps are reversible, with the equilibrium shifted toward product by the final deprotonation of the carboxylic acid. Basic hydrolysis is substantially more difficult than the analogous acid-catalyzed reaction because amide ion is a very poor leaving group, making the elimination step difficult. 

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