Alkylating agent, cysteine

Trifluoroacetic acid removes tert-butyl-based protectors by the S vl mechanism, with the cation being trapped by the trifluoroacetate anion however, the tert-butyl trifluoroacetate produced is an alkylating agent, and the acid is not strong enough to protonate the side chains of methionine, tryptophan, and cysteine, so these are acceptors of tert-butyl. A scavenger is required to prevent their alkylation. Anisole... 

As deduced from the DNA sequence of the gene, AMDase contains four cysteine residues. Since a-halocarboxylic acids are generally active alkylating agents there is a possibility that a-bromophenylacetic acid reacts with several cysteine residues of the enzyme. Therefore, we tried to clarify how many cysteine residues react with this inhibitor. It is well established that when p-chloromercuri-benzoate (PCMB) binds to a cysteine residue, the absorbance at 255 nm increases due to the formation of an aryl-Hg-S bond. Thus it is possible to estimate the number of free S-H residues of the enzyme by titration with PCMB solution (Fig. 6). When the native enzyme had reacted with PCMB, the absorbance at 255 nm increased by 0.025. On the other hand, when PCMB solution was added to the enzyme solution after the enzyme was incubated with a-bromophenyl-... 

Fig. 5. Labeling schemes for identification of cysteine ligands to Fe S clusters. RX and TX are alkylating agents as described in text.

This protects against alkylating agents such as ethylnitrosourea, which will ethylate DNA bases (Fig. 6.47). The methyl or ethyl group is transferred to a cysteine in the enzyme, regenerating the normal base. 

Latent forms of MMPs can be activated by mechanisms which cause the dissociation of the intramolecular complex between a particular cysteine residue and the required zinc metal ligand (a complex that blocks the active site) [47], This occurs because the cysteine of the latent enzyme is coordinated to the active site in a particular way that blocks the MMP active site. Collectively, the activation of MMPs occurs through a process which has been termed the cysteine-switch . Activators of the MMPs include proteases (e.g. plasmin), conformational perturbants (SDS, NaSCN), heavy metals and organomercurials (e.g. Au(I) compounds, Hg(II)), oxidants (e.g. OC1-), disulfide compounds (e.g. GSSG) and sulfhydryl alkylating agents (e.g. V-ethylmaleimide) [47 and refs, therein]. 

Table 6. Effect of thiosulphate and cysteine on LD50 of nitrogen mustards. Reproduced from the paper by Connors, T.A., Jeny, A and Jones, M. (1964), Reduction of the toxicity of radiomimetic alkylating agents in rats by thiol pretreatment-III. The mechanism of the protective action of thiosulphate. Biochem. Pharmacol., 13, 1545-1550... 

In addition to n-alanine and n-glutamate, many bacterial cell walls also contain meso-diaminopimelate (DAP) [2]. DAP is produced by epimerization from l,l-DAP to d,l-DAP by the cofactor independent diaminopimelate epimerase [97, 98]. The structure of this enzyme has been solved and two cysteines in the active site were proposed to be the acid-base catalysts [99]. The pattern of label incorporation from tritiated water is consistent with a two-base mechanism [97]. The enzyme has been shown to be stoichiometrically inhibited by the thiol alkylating agent aziDAP [97]. Interestingly, DAP epimerase has an equilibrium constant of 2 (Keq = [d,l]/[l,l]) duc to the statistically expected higher concentration of the [d,l] form at equilibrium between these species [100]. 

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