Adenosine structures

The catalytic subunit of cAPK contains two domains connected by a peptide linker. ATP binds in a deep cleft between the two domains. Presently, crystal structures showed cAPK in three different conformations, (1) in a closed conformation in the ternary complex with ATP or other tight-binding ligands and a peptide inhibitor PKI(5-24), (2) in an intermediate conformation in the binary complex with adenosine, and (3) in an open conformation in the binary complex of mammalian cAPK with PKI(5-24). Fig.l shows a superposition of the three protein kinase configurations to visualize the type of conformational movement. 

As a template for an intermediate conformation of protein kinase, the crystal structure of the binary complex of cAPK with adenosine (Ibkx.pdb in the Protein Data Bank) was used. As templates for open conformations... 

The numbering scheme used for nucleosides maintains the independence of the two structural units The pyrimidine or purine is numbered m the usual way So is the car bohydrate except that a prime symbol ( ) follows each locant Thus adenosine is a nude oside of D nbose and 2 deoxyadenosine is a nucleoside of 2 deoxy d ribose... 

The D arabinose analog of adenosine is an anitiviral agent (vidarabine) used to treat con junctivitis and shingles Wnte a structural formula for this compound... 

The structure and formation of ATP. (A) The chemical structure of adenosine triphosphate (ATP). "C" indicates carbon, "N" nitrogen, "O" oxygen, "H" hydrogen and "P" phosphorus. Note the negative charges on the phosphate groups (PO3 ). (B) ATP can be formed from adenosine diphosphate (ADP). 

Draw the structure of cyclic adenosine monophosphate (cAMP), a messenger involved in the regulation of glucose production in the body. Cyclic AMP has a phosphate ring connecting the 3 and 5 hydroxyl groups on adenosine. 

Draw the structure of adenosine 5 -monophosphate (AMP), an intermediate in some biochemical pathways. 

Cyclic adenosine monophosphate (cyclic AMP), a modulator of hormone action, is related to AMP (Problem 29.24) but has its phosphate group linked to two hydroxyl groups at C3 and C5 of the sugar. Draw the structure of cyclic AMP. 

Adenosine triphosphate, coupled reactions and. 1128-1129 function of, 157, 1127-1128 reaction with glucose, 1129 structure of, 157, 1044 S-Adenosylmethionine, from methionine, 669 function of, 382-383 stereochemistry of, 315 structure of, 1045 Adipic acid, structure of, 753 ADP, sec Adenosine diphosphate Adrenaline, biosynthesis of, 382-383 molecular model of, 323 slructure of, 24... 

Atorvastatin, structure of, 105. 516 ATP (see Adenosine triphosphate) ATZ, see Anilinothiazolinone, 1031-1032 Aufbau principle. 6 Axial bonds (cyclohexane), 119 drawing, 120 Azide, amines from, 929 reduction of, 929 Azide synthesis, 929 Azo compound, 944 synthesis of, 944-945 uses of. 945... 

Adenosine Receptors. Figure 1 Structures of widely used AR agonists, both nonselective and selective. Affinities/potencies at the ARs are found in Table 2. (a) Nucleoside derivatives that are either nonselective or selective for A receptors (1-12). (b) Nucleoside derivatives that are selective for A2a. A2a/A2b (mixed), or A3 receptors (13-19). 

RNA-editing is a posttranscriptional mechanism mediated by RNA editases, which results in a site-selective deamination of adenosine to inosine. This alters codons and splicing in nuclear transcripts and thereby alters the structure and function of proteins. 

Derivatives of 2,4-dioxopurine, which may act as adenosine receptor antagonists, depending on the chemical structure. 

Phosphate also plays a central role in the transmission and control of chemical energy within the cells primarily via the hydrolysis of the terminal phosphate ester bond of the adenosine triphosphate (ATP) molecule (Fig. 14-3b). In addition, phosphate is a necessary constituent of phospholipids, which are important components in cell membranes, and as mentioned before, of apatite, which forms structural body parts such as teeth and bones. It is not surprising, therefore, that the cycling of P is closely linked with biological processes. This connection is, in fact, inseparable as organisms cannot exist without P, and their existence controls, to a large extent, the natural distribution of P. 

While the findings in mice are of interest, it is important to note that there are four known mammalian adenosine receptors and that the pattern of adenosine receptor expression on mast cells (as well as other immime cells and/or structural cells), and the regulation of their expression by such cells (e.g., during inflammatory responses), which can represent major determinants of adenosine responses, vary substantially among species [70-72]. For example, it is thought that adenosine-induced broncho-constriction is mediated by adenosine A1 and A2B receptors in rats and mice, A3 receptors in rats, guinea-pigs and mice, and A2B receptors in humans [72]. 

Van der Graaf PH, Nilsson J, Van Schaick EA, Danhof M. Multivariate quantitative structure-pharmacokinetic relationships (QSPKR) analysis of adenosine A1 receptor agonists in rat. J Pharm Sci 1999 88 306-12. 

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