Additional Specific Interactions

For ammonium surfactants there is evidence for the existence of an additional specific interaction between the headgroups of the surfactant and the aromatic solubilisate . This is in line with the observation that partition coefficients for benzene in CTAB solutions are much higher than those for... 

For the triphenylenes discussed above, the only interactions that are involved in the formation of the columns are the arene-arene interactions which, although being strong, are generic and do not have positional information. Additional specific interactions are necessary to keep the molecules positionally ordered with respect to each other and to create chiral columns, as will be discussed in the next sections. 

Heats of adsorption measurements do not lead to very specific interpretation since the isosteric heat of adsorption (AH) arises from both nonspecific interactions, which occur in all cases of adsorption, and from specific interactions with the hydroxy groups nevertheless, valuable conclusions about the binding forces can be deduced. Saturated hydrocarbons, e.g., n-pentane, have a value of — AH of 8.0 kcal/mole, while saturated ethers have values of around 16 kcal/mole.14 Probably dispersion forces only are involved in the former case and additional specific interaction with the silanol-OH occurs in the second case. On graphite, where there is no specific interaction, the heats of adsorption of hydrocarbons and ethers are very similar.17 The heat of adsorption of furan (11 kcal/mole) is 5 kcal/mole less than that of tetrahydrofuran this again indicates the effect that delocalization of electrons by the double bonds has on the binding forces.14... 

The interest in vesicles as models for cell biomembranes has led to much work on the interactions within and between lipid layers. The primary contributions to vesicle stability and curvature include those familiar to us already, the electrostatic interactions between charged head groups (Chapter V) and the van der Waals interaction between layers (Chapter VI). An additional force due to thermal fluctuations in membranes produces a steric repulsion between membranes known as the Helfrich or undulation interaction. This force has been quantified by Sackmann and co-workers using reflection interference contrast microscopy to monitor vesicles weakly adhering to a solid substrate [78]. Membrane fluctuation forces may influence the interactions between proteins embedded in them [79]. Finally, in balance with these forces, bending elasticity helps determine shape transitions [80], interactions between inclusions [81], aggregation of membrane junctions [82], and unbinding of pinched membranes [83]. Specific interactions between membrane embedded receptors add an additional complication to biomembrane behavior. These have been stud-... 

Figure 9.20 Diagram iliustrating the sequence-specific interactions between DNA and p53. The C-terminai a helix and loop LI of p53 bind in the major groove of the DNA. Arg 280 from the a helix and Lys 120 from LI form important specific interactions with bases of the DNA. In addition, Arg 248 from loop L3 binds to the DNA in the minor groove. (Adapted from Y. Cho et al.. Science 265 346-355, 1994.)...

The sequence-specific assignment, however, can be made from NOE spectra (see Figures 18.17 and 18.18b) that record signals from H atoms that are close together in space. In addition to the interactions between H atoms that are far apart in the sequence, these spectra also record interactions between H atoms from sequentially adjacent residues, specifically, interactions from the H atom attached to the main chain N of residue number i -r 1 to H atoms bonded to N, Ca, and Cp of residue number i (Figure 18.19a). 

Calculate activation energies for the preferred addition mode of each reagent. (Data for borane, 9-BBN and cis-4-methylpent-2-ene are available.) Which reaction will be faster Is the faster reaction more or less regioselective than the slower reaction Compare the structures of the two transition states and identify specific interactions that can account for differences in regioselectivity and reactivity. Use space-filling models. 

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In Eq. (6) Ecav represents the energy necessary to create a cavity in the solvent continuum. Eel and Eydw depict the electrostatic and van-der-Waals interactions between solute and the solvent after the solute is brought into the cavity, respectively. The van-der-Waals interactions divide themselves into dispersion and repulsion interactions (Ed sp, Erep). Specific interactions between solute and solvent such as H-bridges and association can only be considered by additional assumptions because the solvent is characterized as a structureless and polarizable medium by macroscopic constants such as dielectric constant, surface tension and volume extension coefficient. The use of macroscopic physical constants in microscopic processes in progress is an approximation. Additional approximations are inherent to the continuum models since the choice of shape and size of the cavity is arbitrary. Entropic effects are considered neither in the continuum models nor in the supermolecule approximation. Despite these numerous approximations, continuum models were developed which produce suitabel estimations of solvation energies and effects (see Refs. 10-30 in 68)). 

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