Acid hydrolysis nucleosides

This group was developed for protection of the 5 -OH group in nucleosides. The derivative is prepared from the corresponding triaiylmethyl chloride, and is cleaved by reductive cleavage (Zn/AcOH) of the phenacyl ether to the p-hydroxyphenyl-diphenylmethyl ether followed by acidic hydrolysis with formic acid. ... 

The pixyl ether is prepared from the xanthenyl chloride in 68-87% yield. This group has been used extensively in the protection of the 5 -OH of nucleosides it is readily cleaved by acidic hydrolysis (80% AcOH, 20°, 8-15 min, 100% yield, or 3% trichloroacetic acid). It can be cleaved under neutral conditions with ZnBrj, thus reducing the extent of the often troublesome depurination of A -6-benzyloxy-adenine residues during deprotection. Conditions which remove the pixyl group also partially cleave the THP group (t,/2 for THP at 2 -OH of ribonucleoside = 560 s in 3% Cl2CHC02H/CH2Cl2). ... 

Sulfenamides, R2NSR, prepared from an amine and a sulfenyl halide, " are readily cleaved by acid hydrolysis and have been used in syntheses of peptides, penicillins, and nucleosides. They are also cleaved by nucleophiles, and by Raney nickel desulfurization. ... 

Nucleosides are much more water-soluble than the free bases because of the hydrophilicity of the sugar moiety. Like glycosides (see Chapter 7), nucleosides are relatively stable in alkali. Pyrimidine nucleosides are also resistant to acid hydrolysis, but purine nucleosides are easily hydrolyzed in acid to yield the free base and pentose. 

The furanoid vinyl ethers described above are of interest in view of the structure of the nucleoside antibiotic angustmycin A (2) (15) which also contains an exocyclic double bond. As a first step towards the synthesis of analogs of angustmycin A (2), preparation of exocyclic vinyl ethers from hexulofuranoid derivatives was studied. Benzoylation of 2,3 4,6-di-0-isopropylidene-a-L-ryZo-hexulofuranose (44) followed by selective acid hydrolysis of the 4,6-O-isopropylidene group afforded l-0-benzoyl-2,3-0-isopropylidene-a-L-ryZohexulofuranose (45) in 72%... 

A specific approach for the measurement of base damage to DNA involves the hydrolysis of DNA into monomeric units. Acidic hydrolysis leads to the release of bases while enzymatic treatment yields nucleosides. The resulting mixture of lesions together with the overwhelming presence of normal bases or nucleosides is resolved by chromatography. The targeted damage is then quantified by use of specific detection systems. 

Kalek, M., Jemielity, J., Grudzien, E., Zuberek, J., Bojarska, E., Cohen, L., Stepinski, J., Stolarski, R., Davis, R. E., Rhoads, R. E., and Darzynkiewicz, E. (2005). Synthesis and biochemical properties of novel mRNA S cap analogs resistant to enzymatic hydrolysis. Nucleosides, Nucleotides, and Nucleic Acid 24, 615-621. 

In addition to the aforementioned allenic steroids, prostaglandins, amino acids and nucleoside analogs, a number of other functionalized allenes have been employed (albeit with limited success) in enzyme inhibition (Scheme 18.56) [154-159]. Thus, the 7-vinylidenecephalosporin 164 and related allenes did not show the expected activity as inhibitors of human leukocyte elastase, but a weak inhibition of porcine pancreas elastase [156], Similarly disappointing were the immunosuppressive activity of the allenic mycophenolic acid derivative 165 [157] and the inhibition of 12-lipoxygenase by the carboxylic acid 166 [158]. In contrast, the carboxyallenyl phosphate 167 turned out to be a potent inhibitor of phosphoenolpyruvate carboxylase and pyruvate kinase [159]. Hydrolysis of this allenic phosphate probably leads to 2-oxobut-3-enoate, which then undergoes an irreversible Michael addition with suitable nucleophilic side chains of the enzyme. 

Compound 59 is substantially more stable toward acid hydrolysis than the alkyl anhydroarabinoside 54, because boiling for three hours under reflux in 0.2 M sulfuric acid is needed in order to liberate the uracil. It should be noted, however, that the acid hydrolysis of pyrimidine nucleosides requires77 conditions considerably more severe than those needed for cleaving the anhydronucleoside 59. 

The assignment of the 2-deoxy-D-er yhydroxymethyl)cytosine deoxynucleoside rested, at first, on the fact that purine nucleosides of T6 nucleic acid liberated, on weak acid hydrolysis, a deoxypentose having the same R value as the deoxypentose of thymus deoxyribonucleic acid.37 In addition, the glucose-free nucleotide of 5-(hy-droxymethyl)cytosine39 gave a positive Dische test76 for deoxypentose. 

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