A X-ray crystallography

Fig. 13. Molecular structure of lV-methyl-N-(2-nitrophenyl)cinnamanilide from (a) X-ray crystallography (bifurcated intermolecular hydrogen bonds are also shown) (b) AMI calculation. Formula diagram is given in the inset (reproduced with permission from Gopalan et al. [68]).

Single-crystal surfaces are characterized by a set of Miller indices that indicate tlie particular crystallographic orientation of the surface plane relative to the bulk lattice [5]. Thus, surfaces are labelled in the same way that atomic planes are labelled in bulk x-ray crystallography. For example, a Ni (111) surface has a surface plane... 

Physical, chemical, and biological properties are related to the 3D structure of a molecule. In essence, the experimental sources of 3D structure information are X-ray crystallography, electron diffraction, or NMR spectroscopy. For compounds without experimental data on their 3D structure, automatic methods for the conversion of the connectivity information into a 3D model are required (see Section 2.9 of this Textbook and Part 2, Chapter 7.1 of the Handbook) [16]. 

The input to a minimisation program consists of a set of initial coordinates for the system. The initial coordinates may come from a variety of sources. They may be obtained from an experimental technique, such as X-ray crystallography or NMR. In other cases a theoretical method is employed, such as a conformational search algorithm. A combination of experimenfal and theoretical approaches may also be used. For example, to study the behaviour of a protein in water one may take an X-ray structure of the protein and immerse it in a solvent bath, where the coordinates of the solvent molecules have been obtained from a Monte Carlo or molecular dynamics simulation. 

PDB, NRL3D Protein Data Bank - protein structures (mostly fror X-ray crystallography). NRL3D is a derived sequence database in PIR format... 

In spite of their easy interconversion in solution a and p forms of carbohydrates are capable of independent existence and many have been isolated m pure form as crys talline solids When crystallized from ethanol d glucose yields a d glucopyranose mp 146°C [a]o +112 2° Crystallization from a water-ethanol mixture produces p d glucopyranose mp 148-155°C [aj +18 7° In the solid state the two forms do not mterconvert and are stable indefinitely Their structures have been unambiguously con firmed by X ray crystallography... 

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