Urea crystal structure

Incorporation of the position of water molecules that are firmly bound to the protein can impart affinity and novelty to the designed ligand. A prime example is the design of a class of HIV protease cyclic urea inhibitors by DuPont scientists that incorporated a water molecule bound to both flaps of the enzyme into their ligand [32]. The crystal structure of the HIV protease-cyclic urea complex [32] shows the urea carbonyl oxygen substituting for the position of the water molecule. 

Observation of the Norrish Type II reaction presents some difficulty in that generation of the biradical intermediate 12 requires a six-membered transition state and this is in conflict with the linear guest arrangement normally expected in the channel. However, as noted earlier, accommodation of planar six-membered rings in urea inclusion complexes has been observed 38. It appears that in this case the necessary six-membered transition state can be produced in the channel without destruction of the crystal structure. 

Figure 1. Hexagonal C-H—N based channels in the crystal structure of complex 5 formed by 4,4-dicyanobiphenyl and urea. Synthon III is highlighted. Note that there are two geometrical variations of this synthon.

Working first with Polanyi, Weissenberg, and Brill, and later as the leader of the Textile Chemistry Section, Mark successively published papers on the crystal structures of hexamethylenetetramine, pentaerythritol, zinc salts, tin, urea, tin salts, triphenylmethane, bismuth, graphite, sulfur, oxalic acid, acetaldehyde, ammonia, ethane, diborane, carbon dioxide, and some aluminum silicates. Each paper showed his and the laboratory s increasing sophistication in the technique of X-ray diffraction. Their work over the period broadened to include contributions to the theories of atomic and molecular structure and X-ray scattering theory. A number of his papers were particularly notable including his work with Polanyi on the structure of white tin ( 3, 4 ), E. Wigner on the structure of rhombic sulfur (5), and E. Pohland on the low temperature crystal structure of ammonia and carbon dioxide (6, 7). The Mark-Szilard effect, a classical component of X-ray physics, was a result of his collaboration with Leo Szilard (8). And his work with E. A. Hauser (9, 10, 11) on rubber and J. R. 

Systems that react in this manner fall into two classes. In the first of these the framework that dominates the crystal structure scarcely participates in the reaction. This is the case, for example, in the reaction of an organic molecule intercalated in graphite or a clay, or of a guest molecule held in a clathrate of urea or thiourea. Some cases of this sort will be treated in the next section. 

Most hydrogen-bond-containing crystal structures are homomolecular, i.e. both the hydrogen-bond accepting and donating functionality exist in the same molecule. Examples of such co-crystals are urea and thiourea derivatives as well as non-cyclic imides156,179,180. 

A crystal structure of an unstable JV,JV -[bis-(d-tosylbenzyl)urea-acetone hydrogen-bonded adduct had been reported earlier Tel, R M. and Engberts, J.B.F.N. (1976)./. Chem. Soc. Perkin Trans. 2, 483 88. 

Crystal structure (continued) longilene peroxide, 136 peracids, 125-7 peresters, 127-8, 138, 139 urea-hydrogen peroxide, 98, 99 see also Structure... 

Urea-hydrogen peroxide (UHP) crystal structure, 98, 99 disilazane reactions, 814-15 transition metal peroxides, 1083, 1089-90, 1099, 1103, 1113 Uric acid... 

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