Tryptophan functional group

Fluorescence detectors, discussed in Chapter 1, are extremely sensitive picogram quantities of sample can sometimes be detected. However, most polymers (with the exception of certain proteins) are not fluorescent and thus these detectors are rarely used in GPC. Proteins, particularly those containing tryptophan, fluoresce intensely and are readily detected. Because both the IR and the fluorimetric detector are selective for certain functional groups, rather than being sensitive to analyte mass, there are many pitfalls in quantitation. These and other detectors have been reviewed.177178... 

The functional groups of the enzyme involved in the chemical bonding are the TV-terminal and s-amino groups (from lysine) as well as the carboxy-(aspartic or glutamic acid), sulfhydryl- (cysteine), hydroxyl- (serine, threonine), indole (tryptophan), imidazole (hystidine) and phenolic (tyrosine) functions. 

Numerous examples of modiflcations to the fundamental cyclodextrin structure have appeared in the literature.The aim of much of this work has been to improve the catalytic properties of the cyclodextrins, and thus to develop so-called artificial enzymes. Cyclodextrins themselves have long been known to be capable of catalyzing such reactions as ester hydrolysis by interaction of the guest with the secondary hydroxyl groups around the rim of the cyclodextrin cavity. The replacement, by synthetic methods, of the hydroxyl groups with other functional groups has been shown, however, to improve remarkably the number of reactions capable of catalysis by the cyclodextrins. For example, Breslow and CO workersreported the attachment of the pyridoxamine-pyridoxal coenzyme group to beta cyclodextrin, and thus found a two hundred-fold acceleration of the conversion of indolepyruvic acid into tryptophan. 

In summary, protein molecules may contain up to nine amino acids that are readily derivatizable at their side chains aspartic acid, glutamic acid, lysine, arginine, cysteine, histidine, tyrosine, methionine, and tryptophan. These nine residues contain eight principal functional groups with sufficient reactivity for modification reactions primary amines, carboxylates, sulfhydryls (or disulfides), thioethers, imidazolyls, gua-nidinyl groups, and phenolic and indolyl rings. All of these side chain functional groups in addition to the N-terminal a-amino and the C-terminal a-carboxylate form the full complement of polypeptide reactivity within proteins (Fig. 12). 

Remember that these are only suggestions, but we hope you ll agree that this style of diagram looks much less cluttered and makes the functional groups much clearer than the diagrams on p. 20. Moreover, they still bear significant resemblance to the real thing —compare these crystal structures of lysine and tryptophan with the structures shown above, for example. 

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